BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

226 related articles for article (PubMed ID: 31728526)

  • 1. TerrestrialMetagenomeDB: a public repository of curated and standardized metadata for terrestrial metagenomes.
    Corrêa FB; Saraiva JP; Stadler PF; da Rocha UN
    Nucleic Acids Res; 2020 Jan; 48(D1):D626-D632. PubMed ID: 31728526
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes.
    Kasmanas JC; Bartholomäus A; Corrêa FB; Tal T; Jehmlich N; Herberth G; von Bergen M; Stadler PF; Carvalho ACPLF; Nunes da Rocha U
    Nucleic Acids Res; 2021 Jan; 49(D1):D743-D750. PubMed ID: 33221926
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
    Nata'ala MK; Avila Santos AP; Coelho Kasmanas J; Bartholomäus A; Saraiva JP; Godinho Silva S; Keller-Costa T; Costa R; Gomes NCM; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Nunes da Rocha U
    Environ Microbiome; 2022 Nov; 17(1):57. PubMed ID: 36401317
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The AnimalAssociatedMetagenomeDB reveals a bias towards livestock and developed countries and blind spots in functional-potential studies of animal-associated microbiomes.
    Avila Santos AP; Kabiru Nata'ala M; Kasmanas JC; Bartholomäus A; Keller-Costa T; Jurburg SD; Tal T; Camarinha-Silva A; Saraiva JP; Ponce de Leon Ferreira de Carvalho AC; Stadler PF; Sipoli Sanches D; Rocha U
    Anim Microbiome; 2023 Oct; 5(1):48. PubMed ID: 37798675
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A database of animal metagenomes.
    Hu R; Yao R; Li L; Xu Y; Lei B; Tang G; Liang H; Lei Y; Li C; Li X; Liu K; Wang L; Zhang Y; Wang Y; Cui Y; Dai J; Ni W; Zhou P; Yu B; Hu S
    Sci Data; 2022 Jun; 9(1):312. PubMed ID: 35710683
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Elviz - exploration of metagenome assemblies with an interactive visualization tool.
    Cantor M; Nordberg H; Smirnova T; Hess M; Tringe S; Dubchak I
    BMC Bioinformatics; 2015 Apr; 16(1):130. PubMed ID: 25928663
    [TBL] [Abstract][Full Text] [Related]  

  • 7. "METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive".
    Quiñones M; Liou DT; Shyu C; Kim W; Vujkovic-Cvijin I; Belkaid Y; Hurt DE
    BMC Bioinformatics; 2020 Sep; 21(1):378. PubMed ID: 32883210
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The MAR databases: development and implementation of databases specific for marine metagenomics.
    Klemetsen T; Raknes IA; Fu J; Agafonov A; Balasundaram SV; Tartari G; Robertsen E; Willassen NP
    Nucleic Acids Res; 2018 Jan; 46(D1):D692-D699. PubMed ID: 29106641
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Metagenomes provide valuable comparative information on soil microeukaryotes.
    Jacquiod S; Stenbæk J; Santos SS; Winding A; Sørensen SJ; Priemé A
    Res Microbiol; 2016 Jun; 167(5):436-50. PubMed ID: 27020245
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A metagenomics portal for a democratized sequencing world.
    Wilke A; Glass EM; Bartels D; Bischof J; Braithwaite D; D'Souza M; Gerlach W; Harrison T; Keegan K; Matthews H; Kottmann R; Paczian T; Tang W; Trimble WL; Yilmaz P; Wilkening J; Desai N; Meyer F
    Methods Enzymol; 2013; 531():487-523. PubMed ID: 24060134
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.
    Meyer F; Paarmann D; D'Souza M; Olson R; Glass EM; Kubal M; Paczian T; Rodriguez A; Stevens R; Wilke A; Wilkening J; Edwards RA
    BMC Bioinformatics; 2008 Sep; 9():386. PubMed ID: 18803844
    [TBL] [Abstract][Full Text] [Related]  

  • 12. EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.
    Pafilis E; Buttigieg PL; Ferrell B; Pereira E; Schnetzer J; Arvanitidis C; Jensen LJ
    Database (Oxford); 2016; 2016():. PubMed ID: 26896844
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes.
    Elmassry MM; Kim S; Busby B
    PLoS One; 2021; 16(1):e0244876. PubMed ID: 33411719
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir.
    Fellows Yates JA; Andrades Valtueña A; Vågene ÅJ; Cribdon B; Velsko IM; Borry M; Bravo-Lopez MJ; Fernandez-Guerra A; Green EJ; Ramachandran SL; Heintzman PD; Spyrou MA; Hübner A; Gancz AS; Hider J; Allshouse AF; Zaro V; Warinner C
    Sci Data; 2021 Jan; 8(1):31. PubMed ID: 33500403
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Systematic artifacts in metagenomes from complex microbial communities.
    Gomez-Alvarez V; Teal TK; Schmidt TM
    ISME J; 2009 Nov; 3(11):1314-7. PubMed ID: 19587772
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GMrepo: a database of curated and consistently annotated human gut metagenomes.
    Wu S; Sun C; Li Y; Wang T; Jia L; Lai S; Yang Y; Luo P; Dai D; Yang YQ; Luo Q; Gao NL; Ning K; He LJ; Zhao XM; Chen WH
    Nucleic Acids Res; 2020 Jan; 48(D1):D545-D553. PubMed ID: 31504765
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
    Staley C; Sadowsky MJ
    J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
    Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH
    Front Immunol; 2018; 9():1877. PubMed ID: 30166985
    [TBL] [Abstract][Full Text] [Related]  

  • 19. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
    Camargo AP; Call L; Roux S; Nayfach S; Huntemann M; Palaniappan K; Ratner A; Chu K; Mukherjeep S; Reddy TBK; Chen IA; Ivanova NN; Eloe-Fadrosh EA; Woyke T; Baltrus DA; Castañeda-Barba S; de la Cruz F; Funnell BE; Hall JPJ; Mukhopadhyay A; Rocha EPC; Stalder T; Top E; Kyrpides NC
    Nucleic Acids Res; 2024 Jan; 52(D1):D164-D173. PubMed ID: 37930866
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Megx.net: integrated database resource for marine ecological genomics.
    Kottmann R; Kostadinov I; Duhaime MB; Buttigieg PL; Yilmaz P; Hankeln W; Waldmann J; Glöckner FO
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D391-5. PubMed ID: 19858098
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.