These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
24. Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Mukherjee S; Stamatis D; Bertsch J; Ovchinnikova G; Verezemska O; Isbandi M; Thomas AD; Ali R; Sharma K; Kyrpides NC; Reddy TB Nucleic Acids Res; 2017 Jan; 45(D1):D446-D456. PubMed ID: 27794040 [TBL] [Abstract][Full Text] [Related]
25. MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources. Marks PC; Bigler M; Alsop EB; Vigneron A; Lomans BP; De Paula R; Geissler B; Tsesmetzis N Database (Oxford); 2018 Jan; 2018():1-10. PubMed ID: 30212909 [TBL] [Abstract][Full Text] [Related]
26. Exploration of noncoding sequences in metagenomes. Tobar-Tosse F; Rodríguez AC; Vélez PE; Zambrano MM; Moreno PA PLoS One; 2013; 8(3):e59488. PubMed ID: 23536879 [TBL] [Abstract][Full Text] [Related]
27. Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors. Owen JG; Charlop-Powers Z; Smith AG; Ternei MA; Calle PY; Reddy BV; Montiel D; Brady SF Proc Natl Acad Sci U S A; 2015 Apr; 112(14):4221-6. PubMed ID: 25831524 [TBL] [Abstract][Full Text] [Related]
29. De-MetaST-BLAST: a tool for the validation of degenerate primer sets and data mining of publicly available metagenomes. Gulvik CA; Effler TC; Wilhelm SW; Buchan A PLoS One; 2012; 7(11):e50362. PubMed ID: 23189198 [TBL] [Abstract][Full Text] [Related]
30. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language. Coelho LP; Alves R; Monteiro P; Huerta-Cepas J; Freitas AT; Bork P Microbiome; 2019 Jun; 7(1):84. PubMed ID: 31159881 [TBL] [Abstract][Full Text] [Related]
31. AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata. Liang X; Akers K; Keenum I; Wind L; Gupta S; Chen C; Aldaihani R; Pruden A; Zhang L; Knowlton KF; Xia K; Heath LS BMC Bioinformatics; 2021 Mar; 22(1):117. PubMed ID: 33691615 [TBL] [Abstract][Full Text] [Related]
32. Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes. Glass EM; Wilkening J; Wilke A; Antonopoulos D; Meyer F Cold Spring Harb Protoc; 2010 Jan; 2010(1):pdb.prot5368. PubMed ID: 20150127 [No Abstract] [Full Text] [Related]
33. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function. Keegan KP; Glass EM; Meyer F Methods Mol Biol; 2016; 1399():207-33. PubMed ID: 26791506 [TBL] [Abstract][Full Text] [Related]
35. Antibiotic resistance genes across a wide variety of metagenomes. Fitzpatrick D; Walsh F FEMS Microbiol Ecol; 2016 Feb; 92(2):. PubMed ID: 26738556 [TBL] [Abstract][Full Text] [Related]
36. pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive. Choudhary S F1000Res; 2019; 8():532. PubMed ID: 31114675 [TBL] [Abstract][Full Text] [Related]