These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

202 related articles for article (PubMed ID: 31733057)

  • 1. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database.
    Fortriede JD; Pells TJ; Chu S; Chaturvedi P; Wang D; Fisher ME; James-Zorn C; Wang Y; Nenni MJ; Burns KA; Lotay VS; Ponferrada VG; Karimi K; Zorn AM; Vize PD
    Nucleic Acids Res; 2020 Jan; 48(D1):D776-D782. PubMed ID: 31733057
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Xenbase: a genomic, epigenomic and transcriptomic model organism database.
    Karimi K; Fortriede JD; Lotay VS; Burns KA; Wang DZ; Fisher ME; Pells TJ; James-Zorn C; Wang Y; Ponferrada VG; Chu S; Chaturvedi P; Zorn AM; Vize PD
    Nucleic Acids Res; 2018 Jan; 46(D1):D861-D868. PubMed ID: 29059324
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Xenbase: Core features, data acquisition, and data processing.
    James-Zorn C; Ponferrada VG; Burns KA; Fortriede JD; Lotay VS; Liu Y; Brad Karpinka J; Karimi K; Zorn AM; Vize PD
    Genesis; 2015 Aug; 53(8):486-97. PubMed ID: 26150211
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Xenbase: key features and resources of the Xenopus model organism knowledgebase.
    Fisher M; James-Zorn C; Ponferrada V; Bell AJ; Sundararaj N; Segerdell E; Chaturvedi P; Bayyari N; Chu S; Pells T; Lotay V; Agalakov S; Wang DZ; Arshinoff BI; Foley S; Karimi K; Vize PD; Zorn AM
    Genetics; 2023 May; 224(1):. PubMed ID: 36755307
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
    James-Zorn C; Ponferrada V; Fisher ME; Burns K; Fortriede J; Segerdell E; Karimi K; Lotay V; Wang DZ; Chu S; Pells T; Wang Y; Vize PD; Zorn A
    Methods Mol Biol; 2018; 1757():251-305. PubMed ID: 29761462
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Xenbase: a Xenopus biology and genomics resource.
    Bowes JB; Snyder KA; Segerdell E; Gibb R; Jarabek C; Noumen E; Pollet N; Vize PD
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D761-7. PubMed ID: 17984085
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Xenbase: expansion and updates of the Xenopus model organism database.
    James-Zorn C; Ponferrada VG; Jarabek CJ; Burns KA; Segerdell EJ; Lee J; Snyder K; Bhattacharyya B; Karpinka JB; Fortriede J; Bowes JB; Zorn AM; Vize PD
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D865-70. PubMed ID: 23125366
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Xenbase: gene expression and improved integration.
    Bowes JB; Snyder KA; Segerdell E; Jarabek CJ; Azam K; Zorn AM; Vize PD
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D607-12. PubMed ID: 19884130
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Xenbase literature curation process.
    Bowes JB; Snyder KA; James-Zorn C; Ponferrada VG; Jarabek CJ; Burns KA; Bhattacharyya B; Zorn AM; Vize PD
    Database (Oxford); 2013; 2013():bas046. PubMed ID: 23303299
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms.
    Arshinoff BI; Cary GA; Karimi K; Foley S; Agalakov S; Delgado F; Lotay VS; Ku CJ; Pells TJ; Beatman TR; Kim E; Cameron RA; Vize PD; Telmer CA; Croce JC; Ettensohn CA; Hinman VF
    Nucleic Acids Res; 2022 Jan; 50(D1):D970-D979. PubMed ID: 34791383
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.
    Karpinka JB; Fortriede JD; Burns KA; James-Zorn C; Ponferrada VG; Lee J; Karimi K; Zorn AM; Vize PD
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D756-63. PubMed ID: 25313157
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.
    Karimi K; Vize PD
    Database (Oxford); 2014; 2014():. PubMed ID: 25380782
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
    Mendoza-Parra MA; Saleem MA; Blum M; Cholley PE; Gronemeyer H
    Methods Mol Biol; 2016; 1418():243-65. PubMed ID: 27008019
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data.
    Rubio-Camarillo M; López-Fernández H; Gómez-López G; Carro Á; Fernández JM; Torre CF; Fdez-Riverola F; Glez-Peña D
    Comput Methods Programs Biomed; 2017 Jan; 138():73-81. PubMed ID: 27886717
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Toward an unbiased evolutionary platform for unraveling Xenopus developmental gene networks.
    Beer R; Wagner F; Grishkevich V; Peshkin L; Yanai I
    Genesis; 2012 Mar; 50(3):186-91. PubMed ID: 21956895
    [TBL] [Abstract][Full Text] [Related]  

  • 17.
    Zeng J; Li G
    Int J Biol Sci; 2018; 14(12):1724-1731. PubMed ID: 30416387
    [No Abstract]   [Full Text] [Related]  

  • 18. The mouse Gene Expression Database (GXD): 2021 update.
    Baldarelli RM; Smith CM; Finger JH; Hayamizu TF; McCright IJ; Xu J; Shaw DR; Beal JS; Blodgett O; Campbell J; Corbani LE; Frost PJ; Giannatto SC; Miers DB; Kadin JA; Richardson JE; Ringwald M
    Nucleic Acids Res; 2021 Jan; 49(D1):D924-D931. PubMed ID: 33104772
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Xenopus genomic data and browser resources.
    Vize PD; Zorn AM
    Dev Biol; 2017 Jun; 426(2):194-199. PubMed ID: 27039265
    [TBL] [Abstract][Full Text] [Related]  

  • 20. NetSeekR: a network analysis pipeline for RNA-Seq time series data.
    Srivastava H; Ferrell D; Popescu GV
    BMC Bioinformatics; 2022 Jan; 23(1):54. PubMed ID: 35090393
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.