255 related articles for article (PubMed ID: 31744472)
1. A-Lister: a tool for analysis of differentially expressed omics entities across multiple pairwise comparisons.
Listopad SA; Norden-Krichmar TM
BMC Bioinformatics; 2019 Nov; 20(1):595. PubMed ID: 31744472
[TBL] [Abstract][Full Text] [Related]
2. Development of a bioinformatics platform for analysis of quantitative transcriptomics and proteomics data: the OMnalysis.
Tyagi P; Bhide M
PeerJ; 2021; 9():e12415. PubMed ID: 34820180
[TBL] [Abstract][Full Text] [Related]
3. GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.
Eden E; Navon R; Steinfeld I; Lipson D; Yakhini Z
BMC Bioinformatics; 2009 Feb; 10():48. PubMed ID: 19192299
[TBL] [Abstract][Full Text] [Related]
4. Kerfuffle: a web tool for multi-species gene colocalization analysis.
Aboukhalil R; Fendler B; Atwal GS
BMC Bioinformatics; 2013 Jan; 14():22. PubMed ID: 23327649
[TBL] [Abstract][Full Text] [Related]
5. Gene function analysis in complex data sets using ErmineJ.
Gillis J; Mistry M; Pavlidis P
Nat Protoc; 2010 Jun; 5(6):1148-59. PubMed ID: 20539290
[TBL] [Abstract][Full Text] [Related]
6. Metabolome searcher: a high throughput tool for metabolite identification and metabolic pathway mapping directly from mass spectrometry and using genome restriction.
Dhanasekaran AR; Pearson JL; Ganesan B; Weimer BC
BMC Bioinformatics; 2015 Feb; 16(1):62. PubMed ID: 25887958
[TBL] [Abstract][Full Text] [Related]
7. A comparison of transcriptome analysis methods with reference genome.
Liu X; Zhao J; Xue L; Zhao T; Ding W; Han Y; Ye H
BMC Genomics; 2022 Mar; 23(1):232. PubMed ID: 35337265
[TBL] [Abstract][Full Text] [Related]
8. MILANO--custom annotation of microarray results using automatic literature searches.
Rubinstein R; Simon I
BMC Bioinformatics; 2005 Jan; 6():12. PubMed ID: 15661078
[TBL] [Abstract][Full Text] [Related]
9. Differential Expression Analysis in Single-Cell Transcriptomics.
Alessandrì L; Arigoni M; Calogero R
Methods Mol Biol; 2019; 1979():425-432. PubMed ID: 31028652
[TBL] [Abstract][Full Text] [Related]
10. GOModeler--a tool for hypothesis-testing of functional genomics datasets.
Manda P; Freeman MG; Bridges SM; Jankun-Kelly TJ; Nanduri B; McCarthy FM; Burgess SC
BMC Bioinformatics; 2010 Oct; 11 Suppl 6(Suppl 6):S29. PubMed ID: 20946613
[TBL] [Abstract][Full Text] [Related]
11. dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers.
Yang Z; Wu L; Wang A; Tang W; Zhao Y; Zhao H; Teschendorff AE
Nucleic Acids Res; 2017 Jan; 45(D1):D812-D818. PubMed ID: 27899556
[TBL] [Abstract][Full Text] [Related]
12. List2Net: Linking multiple lists of biological data in a network context.
Afxenti S; Tomazou M; Tsouloupas G; Lambrianides A; Pantzaris M; Spyrou GM
Comput Struct Biotechnol J; 2024 Dec; 23():10-21. PubMed ID: 38075397
[TBL] [Abstract][Full Text] [Related]
13. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
Velmeshev D; Lally P; Magistri M; Faghihi MA
BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
[TBL] [Abstract][Full Text] [Related]
14. GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.
Gundersen GW; Jones MR; Rouillard AD; Kou Y; Monteiro CD; Feldmann AS; Hu KS; Ma'ayan A
Bioinformatics; 2015 Sep; 31(18):3060-2. PubMed ID: 25971742
[TBL] [Abstract][Full Text] [Related]
15. Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms.
Joyce BL; Haug-Baltzell AK; Hulvey JP; McCarthy F; Devisetty UK; Lyons E
J Vis Exp; 2017 May; (123):. PubMed ID: 28518075
[TBL] [Abstract][Full Text] [Related]
16. Advanced query mechanisms for biological databases.
Chen IM; Kosky AS; Markowitz VM; Szeto E; Topaloglou T
Proc Int Conf Intell Syst Mol Biol; 1998; 6():43-51. PubMed ID: 9783208
[TBL] [Abstract][Full Text] [Related]
17. Three Differential Expression Analysis Methods for RNA Sequencing: limma, EdgeR, DESeq2.
Liu S; Wang Z; Zhu R; Wang F; Cheng Y; Liu Y
J Vis Exp; 2021 Sep; (175):. PubMed ID: 34605806
[TBL] [Abstract][Full Text] [Related]
18. JCoDA: a tool for detecting evolutionary selection.
Steinway SN; Dannenfelser R; Laucius CD; Hayes JE; Nayak S
BMC Bioinformatics; 2010 May; 11():284. PubMed ID: 20507581
[TBL] [Abstract][Full Text] [Related]
19. The LAILAPS search engine: relevance ranking in life science databases.
Lange M; Spies K; Bargsten J; Haberhauer G; Klapperstück M; Leps M; Weinel C; Wünschiers R; Weissbach M; Stein J; Scholz U
J Integr Bioinform; 2010 Jan; 7(2):110. PubMed ID: 20134080
[TBL] [Abstract][Full Text] [Related]
20. A fuzzy method for RNA-Seq differential expression analysis in presence of multireads.
Consiglio A; Mencar C; Grillo G; Marzano F; Caratozzolo MF; Liuni S
BMC Bioinformatics; 2016 Nov; 17(Suppl 12):345. PubMed ID: 28185579
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]