240 related articles for article (PubMed ID: 31744869)
1. RNA base-pairing complexity in living cells visualized by correlated chemical probing.
Mustoe AM; Lama NN; Irving PS; Olson SW; Weeks KM
Proc Natl Acad Sci U S A; 2019 Dec; 116(49):24574-24582. PubMed ID: 31744869
[TBL] [Abstract][Full Text] [Related]
2. Direct identification of base-paired RNA nucleotides by correlated chemical probing.
Krokhotin A; Mustoe AM; Weeks KM; Dokholyan NV
RNA; 2017 Jan; 23(1):6-13. PubMed ID: 27803152
[TBL] [Abstract][Full Text] [Related]
3. Carbodiimide reagents for the chemical probing of RNA structure in cells.
Wang PY; Sexton AN; Culligan WJ; Simon MD
RNA; 2019 Jan; 25(1):135-146. PubMed ID: 30389828
[TBL] [Abstract][Full Text] [Related]
4. Single-Molecule Correlated Chemical Probing: A Revolution in RNA Structure Analysis.
Mustoe AM; Weidmann CA; Weeks KM
Acc Chem Res; 2023 Apr; 56(7):763-775. PubMed ID: 36917683
[TBL] [Abstract][Full Text] [Related]
5. Time-Resolved, Single-Molecule, Correlated Chemical Probing of RNA.
Ehrhardt JE; Weeks KM
J Am Chem Soc; 2020 Nov; 142(44):18735-18740. PubMed ID: 33095984
[TBL] [Abstract][Full Text] [Related]
6. Mutation signature filtering enables high-fidelity RNA structure probing at all four nucleobases with DMS.
Mitchell D; Cotter J; Saleem I; Mustoe AM
Nucleic Acids Res; 2023 Sep; 51(16):8744-8757. PubMed ID: 37334863
[TBL] [Abstract][Full Text] [Related]
7. In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC).
Mitchell D; Renda AJ; Douds CA; Babitzke P; Assmann SM; Bevilacqua PC
RNA; 2019 Jan; 25(1):147-157. PubMed ID: 30341176
[TBL] [Abstract][Full Text] [Related]
8. Chemical Probing of RNA Structure In Vivo Using SHAPE-MaP and DMS-MaP.
Saha K; Ghosh G
Methods Mol Biol; 2023; 2666():81-93. PubMed ID: 37166658
[TBL] [Abstract][Full Text] [Related]
9. The interplay between molecular flexibility and RNA chemical probing reactivities analyzed at the nucleotide level via an extensive molecular dynamics study.
Frezza E; Courban A; Allouche D; Sargueil B; Pasquali S
Methods; 2019 Jun; 162-163():108-127. PubMed ID: 31145972
[TBL] [Abstract][Full Text] [Related]
10. Predicted structures of apolipoprotein II mRNA constrained by nuclease and dimethyl sulfate reactivity: stable secondary structures occur predominantly in local domains via intraexonic base pairing.
Hwang SP; Eisenberg M; Binder R; Shelness GS; Williams DL
J Biol Chem; 1989 May; 264(14):8410-8. PubMed ID: 2542276
[TBL] [Abstract][Full Text] [Related]
11. RNA biochemistry. Determination of in vivo target search kinetics of regulatory noncoding RNA.
Fei J; Singh D; Zhang Q; Park S; Balasubramanian D; Golding I; Vanderpool CK; Ha T
Science; 2015 Mar; 347(6228):1371-4. PubMed ID: 25792329
[TBL] [Abstract][Full Text] [Related]
12. RNA Secondary Structure Study by Chemical Probing Methods Using DMS and CMCT.
Alghoul F; Eriani G; Martin F
Methods Mol Biol; 2021; 2300():241-250. PubMed ID: 33792883
[TBL] [Abstract][Full Text] [Related]
13. A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction.
Walker SC; Avis JM
J Mol Biol; 2004 Aug; 341(2):375-88. PubMed ID: 15276830
[TBL] [Abstract][Full Text] [Related]
14. Visualization of RNA structure models within the Integrative Genomics Viewer.
Busan S; Weeks KM
RNA; 2017 Jul; 23(7):1012-1018. PubMed ID: 28428329
[TBL] [Abstract][Full Text] [Related]
15. A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS.
Douds CA; Babitzke P; Bevilacqua PC
RNA; 2024 Jun; 30(7):901-919. PubMed ID: 38670632
[TBL] [Abstract][Full Text] [Related]
16. Chemical and enzymatic probing of spatial structure of the omega leader of tobacco mosaic virus RNA.
Shirokikh NE; Agalarov SCh; Spirin AS
Biochemistry (Mosc); 2010 Apr; 75(4):405-11. PubMed ID: 20618128
[TBL] [Abstract][Full Text] [Related]
17. Visualization of lncRNA and mRNA Structure Models Within the Integrative Genomics Viewer.
Busan S; Weeks KM
Methods Mol Biol; 2021; 2254():15-25. PubMed ID: 33326067
[TBL] [Abstract][Full Text] [Related]
18. Probing RNA structure within living cells.
Liebeg A; Waldsich C
Methods Enzymol; 2009; 468():219-38. PubMed ID: 20946772
[TBL] [Abstract][Full Text] [Related]
19. Chemical probing of RNA in living cells.
Wildauer M; Zemora G; Liebeg A; Heisig V; Waldsich C
Methods Mol Biol; 2014; 1086():159-76. PubMed ID: 24136603
[TBL] [Abstract][Full Text] [Related]
20. Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures.
Golden M; Murrell B; Martin D; Pybus OG; Hein J
Mol Biol Evol; 2020 Feb; 37(2):576-592. PubMed ID: 31665393
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
