These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

191 related articles for article (PubMed ID: 31757201)

  • 1. STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data.
    Dalsass M; Bodini M; Lambert C; Mortier MC; Romanelli M; Medini D; Muzzi A; Brozzi A
    BMC Bioinformatics; 2019 Nov; 20(Suppl 9):347. PubMed ID: 31757201
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Short read sequence typing (SRST): multi-locus sequence types from short reads.
    Inouye M; Conway TC; Zobel J; Holt KE
    BMC Genomics; 2012 Jul; 13():338. PubMed ID: 22827703
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae.
    Singh R; Dillon JR; Demczuk W; Kusalik A
    BMC Genomics; 2019 Mar; 20(1):165. PubMed ID: 30832565
    [TBL] [Abstract][Full Text] [Related]  

  • 4. stringMLST: a fast k-mer based tool for multilocus sequence typing.
    Gupta A; Jordan IK; Rishishwar L
    Bioinformatics; 2017 Jan; 33(1):119-121. PubMed ID: 27605103
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An Open-Source Program (Haplo-ST) for Whole-Genome Sequence Typing Shows Extensive Diversity among Listeria monocytogenes Isolates in Outdoor Environments and Poultry Processing Plants.
    Louha S; Meinersmann RJ; Abdo Z; Berrang ME; Glenn TC
    Appl Environ Microbiol; 2020 Dec; 87(1):. PubMed ID: 33097499
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Surveillance of invasive meningococcal disease based on whole genome sequencing (WGS), Czech Republic, 2015.
    Křížová P; Honskus M; Okonji Z; Musílek M; Kozáková J
    Epidemiol Mikrobiol Imunol; 2018; 67(2):64-73. PubMed ID: 30126283
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.
    Khachatryan L; Kraakman MEM; Bernards AT; Laros JFJ
    BMC Genomics; 2019 May; 20(1):338. PubMed ID: 31060512
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Core Genome Multi-locus Sequence Typing Analyses of Leptospira spp. Using the Bacterial Isolate Genome Sequence Database.
    Grillová L; Picardeau M
    Methods Mol Biol; 2020; 2134():11-21. PubMed ID: 32632855
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MentaLiST - A fast MLST caller for large MLST schemes.
    Feijao P; Yao HT; Fornika D; Gardy J; Hsiao W; Chauve C; Chindelevitch L
    Microb Genom; 2018 Feb; 4(2):. PubMed ID: 29319471
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A multilocus sequence typing scheme for
    Wuzinski M; Bak AK; Petkau A; B Demczuk WH; Soualhine H; Sharma MK
    Int J Mycobacteriol; 2019; 8(3):273-280. PubMed ID: 31512604
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.
    Zolfo M; Tett A; Jousson O; Donati C; Segata N
    Nucleic Acids Res; 2017 Jan; 45(2):e7. PubMed ID: 27651451
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Development of multi locus sequence typing (MLST) of Rodentibacter pneumotropicus.
    Adhikary S; Bisgaard M; Boot R; Benga L; Nicklas W; Christensen H
    Vet Microbiol; 2019 Apr; 231():11-17. PubMed ID: 30955797
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multilocus sequence typing of total-genome-sequenced bacteria.
    Larsen MV; Cosentino S; Rasmussen S; Friis C; Hasman H; Marvig RL; Jelsbak L; Sicheritz-Pontén T; Ussery DW; Aarestrup FM; Lund O
    J Clin Microbiol; 2012 Apr; 50(4):1355-61. PubMed ID: 22238442
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison of Whole Genome Sequencing and Repetitive Element PCR for Multidrug-Resistant Pseudomonas aeruginosa Strain Typing.
    Spinler JK; Raza S; Thapa S; Venkatachalam A; Scott T; Runge JK; Dunn J; Versalovic J; Luna RA
    J Mol Diagn; 2022 Feb; 24(2):158-166. PubMed ID: 34775029
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TORMES: an automated pipeline for whole bacterial genome analysis.
    Quijada NM; Rodríguez-Lázaro D; Eiros JM; Hernández M
    Bioinformatics; 2019 Nov; 35(21):4207-4212. PubMed ID: 30957837
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Investigating Major Recurring
    Nennig M; Llarena AK; Herold M; Mossong J; Penny C; Losch S; Tresse O; Ragimbeau C
    Front Cell Infect Microbiol; 2020; 10():608020. PubMed ID: 33489938
    [No Abstract]   [Full Text] [Related]  

  • 17. Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective.
    Rumore J; Tschetter L; Kearney A; Kandar R; McCormick R; Walker M; Peterson CL; Reimer A; Nadon C
    BMC Genomics; 2018 Dec; 19(1):870. PubMed ID: 30514209
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PGAdb-builder: A web service tool for creating pan-genome allele database for molecular fine typing.
    Liu YY; Chiou CS; Chen CC
    Sci Rep; 2016 Nov; 6():36213. PubMed ID: 27824078
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Development of Mycoplasma synoviae (MS) core genome multilocus sequence typing (cgMLST) scheme.
    Ghanem M; El-Gazzar M
    Vet Microbiol; 2018 May; 218():84-89. PubMed ID: 29685226
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping.
    Nykrynova M; Barton V; Bezdicek M; Lengerova M; Skutkova H
    BMC Genomics; 2022 Dec; 23(Suppl 3):445. PubMed ID: 36581824
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.