These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 31768265)

  • 1. SNAPPy: A snakemake pipeline for scalable HIV-1 subtyping by phylogenetic pairing.
    Araújo PMM; Martins JS; Osório NS
    Virus Evol; 2019 Jul; 5(2):vez050. PubMed ID: 31768265
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.
    Pineda-Peña AC; Faria NR; Imbrechts S; Libin P; Abecasis AB; Deforche K; Gómez-López A; Camacho RJ; de Oliveira T; Vandamme AM
    Infect Genet Evol; 2013 Oct; 19():337-48. PubMed ID: 23660484
    [TBL] [Abstract][Full Text] [Related]  

  • 3. [HIV-1 subtype distribution determined by phylogenetic analysis of pol gene sequences and automated subtyping tools among HIV-1 isolates from the Aegian Region of Turkey].
    Uluer Biçeroğlu S; Altuğlu I; Nazli Zeka A; Gökengin D; Yazan Sertöz R
    Mikrobiyol Bul; 2014 Jul; 48(3):420-8. PubMed ID: 25052108
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.
    Gao F; Robertson DL; Morrison SG; Hui H; Craig S; Decker J; Fultz PN; Girard M; Shaw GM; Hahn BH; Sharp PM
    J Virol; 1996 Oct; 70(10):7013-29. PubMed ID: 8794346
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake.
    Olawoye IB; Frost SDW; Happi CT
    PeerJ; 2020; 8():e10121. PubMed ID: 33194387
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reliability of rapid subtyping tools compared to that of phylogenetic analysis for characterization of human immunodeficiency virus type 1 non-B subtypes and recombinant forms.
    Holguín A; López M; Soriano V
    J Clin Microbiol; 2008 Dec; 46(12):3896-9. PubMed ID: 18842935
    [TBL] [Abstract][Full Text] [Related]  

  • 7. HIV-1 subtyping using phylogenetic analysis of pol gene sequences.
    Pasquier C; Millot N; Njouom R; Sandres K; Cazabat M; Puel J; Izopet J
    J Virol Methods; 2001 May; 94(1-2):45-54. PubMed ID: 11337039
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assessment of HIV-1 subtyping for Cameroon strains using phylogenetic analysis of pol gene sequences.
    Njouom R; Pasquier C; Sandres-Sauné K; Harter A; Souyris C; Izopet J
    J Virol Methods; 2003 Jun; 110(1):1-8. PubMed ID: 12757914
    [TBL] [Abstract][Full Text] [Related]  

  • 9. [Primers of gag gene for HIV-1 subtyping in China and application thereof in practice].
    Xin RL; Feng Y; Cheng CL; Hu YY; Meng ZF; Xing H; Shao YM; He X
    Zhonghua Yi Xue Za Zhi; 2009 Apr; 89(13):876-80. PubMed ID: 19671285
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HIV-1 pol gene diversity and molecular dating of subtype C from Sri Lanka.
    Patil A; Elwitigala JP; Rajapaksa L; Gangakhedkar R; Chaturbhuj D; Pendse R; Rajapaksha DI; Rewari BB; Malliawadu N; Jayamanna K; Dombawela D; Kurle S
    PLoS One; 2020; 15(6):e0234133. PubMed ID: 32525892
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon.
    Pandrea I; Robertson DL; Onanga R; Gao F; Makuwa M; Ngari P; Bedjabaga I; Roques P; Simon F; Apetrei C
    AIDS Res Hum Retroviruses; 2002 Oct; 18(15):1103-16. PubMed ID: 12396449
    [TBL] [Abstract][Full Text] [Related]  

  • 12. [Postmortem Molecular Epidemiology of HIV-1 Strains Isolated in Turkey].
    Ziyade N; Sayan M; Elgörmüş N; Büyük Y
    Mikrobiyol Bul; 2019 Oct; 53(4):374-387. PubMed ID: 31709935
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparative Evaluation of Subtyping Tools for Surveillance of Newly Emerging HIV-1 Strains.
    Fabeni L; Berno G; Fokam J; Bertoli A; Alteri C; Gori C; Forbici F; Takou D; Vergori A; Zaccarelli M; Maffongelli G; Borghi V; Latini A; Pennica A; Mastroianni CM; Montella F; Mussini C; Andreoni M; Antinori A; Perno CF; Santoro MM;
    J Clin Microbiol; 2017 Sep; 55(9):2827-2837. PubMed ID: 28701420
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Phylogeny of partial
    Udeze AO; Olaleye DO; Odaibo GN
    Heliyon; 2020 Aug; 6(8):e04310. PubMed ID: 32775738
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Geographically-stratified HIV-1 group M pol subtype and circulating recombinant form sequences.
    Rhee SY; Shafer RW
    Sci Data; 2018 Jul; 5():180148. PubMed ID: 30063225
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular characterization of non-subtype C and recombinant HIV-1 viruses from Cape Town, South Africa.
    Wilkinson E; Engelbrecht S
    Infect Genet Evol; 2009 Sep; 9(5):840-6. PubMed ID: 19446657
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Characteristics and spread to the native population of HIV-1 non-B subtypes in two European countries with high migration rate.
    Dauwe K; Mortier V; Schauvliege M; Van Den Heuvel A; Fransen K; Servais JY; Bercoff DP; Seguin-Devaux C; Verhofstede C
    BMC Infect Dis; 2015 Nov; 15():524. PubMed ID: 26572861
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences.
    Yu X
    BMC Bioinformatics; 2023 May; 24(1):218. PubMed ID: 37254048
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Near full-length genomes of 15 HIV type 1 group O isolates.
    Yamaguchi J; Bodelle P; Kaptué L; Zekeng L; Gürtler LG; Devare SG; Brennan CA
    AIDS Res Hum Retroviruses; 2003 Nov; 19(11):979-88. PubMed ID: 14678605
    [TBL] [Abstract][Full Text] [Related]  

  • 20. pol gene diversity of five human immunodeficiency virus type 1 subtypes: evidence for naturally occurring mutations that contribute to drug resistance, limited recombination patterns, and common ancestry for subtypes B and D.
    Cornelissen M; van den Burg R; Zorgdrager F; Lukashov V; Goudsmit J
    J Virol; 1997 Sep; 71(9):6348-58. PubMed ID: 9261352
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.