181 related articles for article (PubMed ID: 31769805)
1. Assessment of human diploid genome assembly with 10x Linked-Reads data.
Zhang L; Zhou X; Weng Z; Sidow A
Gigascience; 2019 Nov; 8(11):. PubMed ID: 31769805
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
4. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
Hu Y; Yang C; Zhang L; Zhou X
Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
[TBL] [Abstract][Full Text] [Related]
5. Fully Phased Sequence of a Diploid Human Genome Determined
Soifer L; Fong NL; Yi N; Ireland AT; Lam I; Sooknah M; Paw JS; Peluso P; Concepcion GT; Rank D; Hastie AR; Jojic V; Ruby JG; Botstein D; Roy MA
G3 (Bethesda); 2020 Sep; 10(9):2911-2925. PubMed ID: 32631951
[TBL] [Abstract][Full Text] [Related]
6. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
Wang O; Chin R; Cheng X; Wu MKY; Mao Q; Tang J; Sun Y; Anderson E; Lam HK; Chen D; Zhou Y; Wang L; Fan F; Zou Y; Xie Y; Zhang RY; Drmanac S; Nguyen D; Xu C; Villarosa C; Gablenz S; Barua N; Nguyen S; Tian W; Liu JS; Wang J; Liu X; Qi X; Chen A; Wang H; Dong Y; Zhang W; Alexeev A; Yang H; Wang J; Kristiansen K; Xu X; Drmanac R; Peters BA
Genome Res; 2019 May; 29(5):798-808. PubMed ID: 30940689
[TBL] [Abstract][Full Text] [Related]
7. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
[TBL] [Abstract][Full Text] [Related]
8.
Zhang L; Zhou X; Weng Z; Sidow A
NAR Genom Bioinform; 2020 Mar; 2(1):lqz018. PubMed ID: 33575568
[TBL] [Abstract][Full Text] [Related]
9. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745
[TBL] [Abstract][Full Text] [Related]
10. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
Colella JP; Tigano A; MacManes MD
Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
[TBL] [Abstract][Full Text] [Related]
11. LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome.
Yang C; Zhang Z; Huang Y; Xie X; Liao H; Xiao J; Veldsman WP; Yin K; Fang X; Zhang L
Gigascience; 2024 Jan; 13():. PubMed ID: 38869148
[TBL] [Abstract][Full Text] [Related]
12. Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
[TBL] [Abstract][Full Text] [Related]
13. A graph-based approach to diploid genome assembly.
Garg S; Rautiainen M; Novak AM; Garrison E; Durbin R; Marschall T
Bioinformatics; 2018 Jul; 34(13):i105-i114. PubMed ID: 29949989
[TBL] [Abstract][Full Text] [Related]
14. Hybrid assembly of ultra-long Nanopore reads augmented with 10x-Genomics contigs: Demonstrated with a human genome.
Ma ZS; Li L; Ye C; Peng M; Zhang YP
Genomics; 2019 Dec; 111(6):1896-1901. PubMed ID: 30594583
[TBL] [Abstract][Full Text] [Related]
15. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.
Xu M; Guo L; Gu S; Wang O; Zhang R; Peters BA; Fan G; Liu X; Xu X; Deng L; Zhang Y
Gigascience; 2020 Sep; 9(9):. PubMed ID: 32893860
[TBL] [Abstract][Full Text] [Related]
16. Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data.
Liu YH; Luo C; Golding SG; Ioffe JB; Zhou XM
Nat Commun; 2024 Mar; 15(1):2447. PubMed ID: 38503752
[TBL] [Abstract][Full Text] [Related]
17. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Roach MJ; Schmidt SA; Borneman AR
BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
[TBL] [Abstract][Full Text] [Related]
18. Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.
Umemura M; Koyama Y; Takeda I; Hagiwara H; Ikegami T; Koike H; Machida M
PLoS One; 2013; 8(5):e63673. PubMed ID: 23667655
[TBL] [Abstract][Full Text] [Related]
19. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
20. LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.
Xu GC; Xu TJ; Zhu R; Zhang Y; Li SQ; Wang HW; Li JT
Gigascience; 2019 Jan; 8(1):. PubMed ID: 30576505
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]