2041 related articles for article (PubMed ID: 31779668)
1. Improved metagenomic analysis with Kraken 2.
Wood DE; Lu J; Langmead B
Genome Biol; 2019 Nov; 20(1):257. PubMed ID: 31779668
[TBL] [Abstract][Full Text] [Related]
2. Kraken: ultrafast metagenomic sequence classification using exact alignments.
Wood DE; Salzberg SL
Genome Biol; 2014 Mar; 15(3):R46. PubMed ID: 24580807
[TBL] [Abstract][Full Text] [Related]
3. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
[TBL] [Abstract][Full Text] [Related]
4. KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.
Breitwieser FP; Baker DN; Salzberg SL
Genome Biol; 2018 Nov; 19(1):198. PubMed ID: 30445993
[TBL] [Abstract][Full Text] [Related]
5. Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations.
Lee AY; Lee CS; Van Gelder RN
BMC Bioinformatics; 2016 Jul; 17():292. PubMed ID: 27465705
[TBL] [Abstract][Full Text] [Related]
6. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
[TBL] [Abstract][Full Text] [Related]
7. MetaCache: context-aware classification of metagenomic reads using minhashing.
Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
[TBL] [Abstract][Full Text] [Related]
8. Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2.
Lu J; Salzberg SL
Microbiome; 2020 Aug; 8(1):124. PubMed ID: 32859275
[TBL] [Abstract][Full Text] [Related]
9. k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.
Ainsworth D; Sternberg MJE; Raczy C; Butcher SA
Nucleic Acids Res; 2017 Feb; 45(4):1649-1656. PubMed ID: 27965413
[TBL] [Abstract][Full Text] [Related]
10. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
[TBL] [Abstract][Full Text] [Related]
11. CHEER: HierarCHical taxonomic classification for viral mEtagEnomic data via deep leaRning.
Shang J; Sun Y
Methods; 2021 May; 189():95-103. PubMed ID: 32454212
[TBL] [Abstract][Full Text] [Related]
12. LiveKraken--real-time metagenomic classification of illumina data.
Tausch SH; Strauch B; Andrusch A; Loka TP; Lindner MS; Nitsche A; Renard BY
Bioinformatics; 2018 Nov; 34(21):3750-3752. PubMed ID: 29868852
[TBL] [Abstract][Full Text] [Related]
13. A k-mer based approach for classifying viruses without taxonomy identifies viral associations in human autism and plant microbiomes.
Garcia BJ; Simha R; Garvin M; Furches A; Jones P; Gazolla JGFM; Hyatt PD; Schadt CW; Pelletier D; Jacobson D
Comput Struct Biotechnol J; 2021; 19():5911-5919. PubMed ID: 34849195
[TBL] [Abstract][Full Text] [Related]
14. Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge.
Poussin C; Khachatryan L; Sierro N; Narsapuram VK; Meyer F; Kaikala V; Chawla V; Muppirala U; Kumar S; Belcastro V; Battey JND; Scotti E; Boué S; McHardy AC; Peitsch MC; Ivanov NV; Hoeng J
BMC Genomics; 2022 Aug; 23(1):624. PubMed ID: 36042406
[TBL] [Abstract][Full Text] [Related]
15. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
[TBL] [Abstract][Full Text] [Related]
16. A Comparison of Two DNA Metagenomic Bioinformatic Pipelines While Evaluating the Microbial Diversity in Feces of Tanzanian Small Holder Dairy Cattle.
Kibegwa FM; Bett RC; Gachuiri CK; Stomeo F; Mujibi FD
Biomed Res Int; 2020; 2020():2348560. PubMed ID: 32382536
[TBL] [Abstract][Full Text] [Related]
17. A Massively Parallel Sequence Similarity Search for Metagenomic Sequencing Data.
Kakuta M; Suzuki S; Izawa K; Ishida T; Akiyama Y
Int J Mol Sci; 2017 Oct; 18(10):. PubMed ID: 29019934
[TBL] [Abstract][Full Text] [Related]
18. Re-purposing software for functional characterization of the microbiome.
Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
[TBL] [Abstract][Full Text] [Related]
19. Fast comparison of genomic and meta-genomic reads with alignment-free measures based on quality values.
Comin M; Schimd M
BMC Med Genomics; 2016 Aug; 9 Suppl 1(Suppl 1):36. PubMed ID: 27535823
[TBL] [Abstract][Full Text] [Related]
20.
MacDonald ML; Polson SW; Lee KH
mSphere; 2021 Apr; 6(2):. PubMed ID: 33883263
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
