2041 related articles for article (PubMed ID: 31779668)
21. Taxonomic analysis of metagenomic data with kASA.
Weging S; Gogol-Döring A; Grosse I
Nucleic Acids Res; 2021 Jul; 49(12):e68. PubMed ID: 33784400
[TBL] [Abstract][Full Text] [Related]
22. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
[TBL] [Abstract][Full Text] [Related]
23. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline.
Treangen TJ; Koren S; Sommer DD; Liu B; Astrovskaya I; Ondov B; Darling AE; Phillippy AM; Pop M
Genome Biol; 2013 Jan; 14(1):R2. PubMed ID: 23320958
[TBL] [Abstract][Full Text] [Related]
24. Quality control of microbiota metagenomics by k-mer analysis.
Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M
BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914
[TBL] [Abstract][Full Text] [Related]
25. GRASP2: fast and memory-efficient gene-centric assembly and homolog search for metagenomic sequencing data.
Zhong C; Yang Y; Yooseph S
BMC Bioinformatics; 2019 Jun; 20(Suppl 11):276. PubMed ID: 31167633
[TBL] [Abstract][Full Text] [Related]
26. De novo assembly of highly polymorphic metagenomic data using in situ generated reference sequences and a novel BLAST-based assembly pipeline.
Lin YY; Hsieh CH; Chen JH; Lu X; Kao JH; Chen PJ; Chen DS; Wang HY
BMC Bioinformatics; 2017 Apr; 18(1):223. PubMed ID: 28446139
[TBL] [Abstract][Full Text] [Related]
27. MetaGen: reference-free learning with multiple metagenomic samples.
Xing X; Liu JS; Zhong W
Genome Biol; 2017 Oct; 18(1):187. PubMed ID: 28974263
[TBL] [Abstract][Full Text] [Related]
28. Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
Ulrich JU; Renard BY
Genome Res; 2024 Jun; ():. PubMed ID: 38886068
[TBL] [Abstract][Full Text] [Related]
29. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
30. Large-scale machine learning for metagenomics sequence classification.
Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
[TBL] [Abstract][Full Text] [Related]
31. Prokaryotic virus host predictor: a Gaussian model for host prediction of prokaryotic viruses in metagenomics.
Lu C; Zhang Z; Cai Z; Zhu Z; Qiu Y; Wu A; Jiang T; Zheng H; Peng Y
BMC Biol; 2021 Jan; 19(1):5. PubMed ID: 33441133
[TBL] [Abstract][Full Text] [Related]
32. MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.
Zhu Z; Niu B; Chen J; Wu S; Sun S; Li W
Bioinformatics; 2013 Jan; 29(1):122-3. PubMed ID: 23044549
[TBL] [Abstract][Full Text] [Related]
33. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
34. Metagenomic analysis through the extended Burrows-Wheeler transform.
Guerrini V; Louza FA; Rosone G
BMC Bioinformatics; 2020 Sep; 21(Suppl 8):299. PubMed ID: 32938362
[TBL] [Abstract][Full Text] [Related]
35. MAIRA- real-time taxonomic and functional analysis of long reads on a laptop.
Albrecht B; Bağcı C; Huson DH
BMC Bioinformatics; 2020 Sep; 21(Suppl 13):390. PubMed ID: 32938391
[TBL] [Abstract][Full Text] [Related]
36. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.
Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M
BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143
[TBL] [Abstract][Full Text] [Related]
37. MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.
Petersen TN; Lukjancenko O; Thomsen MCF; Maddalena Sperotto M; Lund O; Møller Aarestrup F; Sicheritz-Pontén T
PLoS One; 2017; 12(5):e0176469. PubMed ID: 28467460
[TBL] [Abstract][Full Text] [Related]
38. Estimating the total genome length of a metagenomic sample using k-mers.
Hua K; Zhang X
BMC Genomics; 2019 Apr; 20(Suppl 2):183. PubMed ID: 30967110
[TBL] [Abstract][Full Text] [Related]
39. Scalable metagenomic taxonomy classification using a reference genome database.
Ames SK; Hysom DA; Gardner SN; Lloyd GS; Gokhale MB; Allen JE
Bioinformatics; 2013 Sep; 29(18):2253-60. PubMed ID: 23828782
[TBL] [Abstract][Full Text] [Related]
40. GHOSTX: A Fast Sequence Homology Search Tool for Functional Annotation of Metagenomic Data.
Suzuki S; Ishida T; Ohue M; Kakuta M; Akiyama Y
Methods Mol Biol; 2017; 1611():15-25. PubMed ID: 28451968
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
