125 related articles for article (PubMed ID: 31782763)
1. genBaRcode: a comprehensive R-package for genetic barcode analysis.
Thielecke L; Cornils K; Glauche I
Bioinformatics; 2020 Apr; 36(7):2189-2194. PubMed ID: 31782763
[TBL] [Abstract][Full Text] [Related]
2. DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments.
Trébeau C; Boutet de Monvel J; Wong Jun Tai F; Petit C; Etournay R
Bioinformatics; 2019 Aug; 35(15):2690-2691. PubMed ID: 30576403
[TBL] [Abstract][Full Text] [Related]
3. Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R; Descostes N; Spinelli L; Koch F; Maqbool MA; Benoukraf T; Cauchy P; Innocenti C; Ferrier P; Andrau JC
Bioinformatics; 2016 Aug; 32(16):2528-30. PubMed ID: 27153642
[TBL] [Abstract][Full Text] [Related]
4. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
Rotimi AM; Pierneef R; Reva ON
BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
[TBL] [Abstract][Full Text] [Related]
5. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
Galanti L; Shasha D; Gunsalus KC
BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
[TBL] [Abstract][Full Text] [Related]
6. qgg: an R package for large-scale quantitative genetic analyses.
Rohde PD; Fourie Sørensen I; Sørensen P
Bioinformatics; 2020 Apr; 36(8):2614-2615. PubMed ID: 31883004
[TBL] [Abstract][Full Text] [Related]
7. bcSeq: an R package for fast sequence mapping in high-throughput shRNA and CRISPR screens.
Lin J; Gresham J; Wang T; Kim SY; Alvarez J; Damrauer JS; Floyd S; Granek J; Allen A; Chan C; Xie J; Owzar K
Bioinformatics; 2018 Oct; 34(20):3581-3583. PubMed ID: 29790906
[TBL] [Abstract][Full Text] [Related]
8. DNABarcodes: an R package for the systematic construction of DNA sample tags.
Buschmann T
Bioinformatics; 2017 Mar; 33(6):920-922. PubMed ID: 28052927
[TBL] [Abstract][Full Text] [Related]
9. synbreed: a framework for the analysis of genomic prediction data using R.
Wimmer V; Albrecht T; Auinger HJ; Schön CC
Bioinformatics; 2012 Aug; 28(15):2086-7. PubMed ID: 22689388
[TBL] [Abstract][Full Text] [Related]
10. ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface.
Fähnrich A; Krebbel M; Decker N; Leucker M; Lange FD; Kalies K; Möller S
BMC Bioinformatics; 2017 Mar; 18(1):164. PubMed ID: 28284194
[TBL] [Abstract][Full Text] [Related]
11. FunctanSNP: an R package for functional analysis of dense SNP data (with interactions).
Ren R; Fang K; Zhang Q; Ma S
Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38060266
[TBL] [Abstract][Full Text] [Related]
12. PACVr: plastome assembly coverage visualization in R.
Gruenstaeudl M; Jenke N
BMC Bioinformatics; 2020 May; 21(1):207. PubMed ID: 32448146
[TBL] [Abstract][Full Text] [Related]
13. SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations.
Zhan X; Liu DJ
Genet Epidemiol; 2015 Dec; 39(8):619-23. PubMed ID: 26394715
[TBL] [Abstract][Full Text] [Related]
14. rnaCrosslinkOO: an object-oriented R package for the analysis of RNA structural data generated by RNA crosslinking experiments.
Price JL; Ziv O; Pinckert ML; Lim A; Miska EA
Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38597883
[TBL] [Abstract][Full Text] [Related]
15. An empirical Bayes method for genotyping and SNP detection using multi-sample next-generation sequencing data.
Huang G; Wang S; Wang X; You N
Bioinformatics; 2016 Nov; 32(21):3240-3245. PubMed ID: 27378300
[TBL] [Abstract][Full Text] [Related]
16. HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments.
Youngblut ND; Barnett SE; Buckley DH
PLoS One; 2018; 13(1):e0189616. PubMed ID: 29298299
[TBL] [Abstract][Full Text] [Related]
17. rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure.
Gautier M; Vitalis R
Bioinformatics; 2012 Apr; 28(8):1176-7. PubMed ID: 22402612
[TBL] [Abstract][Full Text] [Related]
18. tcR: an R package for T cell receptor repertoire advanced data analysis.
Nazarov VI; Pogorelyy MV; Komech EA; Zvyagin IV; Bolotin DA; Shugay M; Chudakov DM; Lebedev YB; Mamedov IZ
BMC Bioinformatics; 2015 May; 16(1):175. PubMed ID: 26017500
[TBL] [Abstract][Full Text] [Related]
19. digeR: a graphical user interface R package for analyzing 2D-DIGE data.
Fan Y; Murphy TB; Watson RW
Bioinformatics; 2009 Nov; 25(22):3033-4. PubMed ID: 19706743
[TBL] [Abstract][Full Text] [Related]
20. VikNGS: a C++ variant integration kit for next generation sequencing association analysis.
Baskurt Z; Mastromatteo S; Gong J; Wintle RF; Scherer SW; Strug LJ
Bioinformatics; 2020 Feb; 36(4):1283-1285. PubMed ID: 31580400
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]