These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

101 related articles for article (PubMed ID: 31795635)

  • 1. Complex Stability is Encoded in Binding Patch Softness: a Monomer-Based Approach to Predict Inter-Subunit Affinity of Protein Dimers.
    Hadi-Alijanvand H
    J Proteome Res; 2020 Jan; 19(1):409-423. PubMed ID: 31795635
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Partner-Specific Prediction of Protein-Dimer Stability from Unbound Structure of Monomer.
    Hadi-Alijanvand H; Rouhani M
    J Chem Inf Model; 2018 Mar; 58(3):733-745. PubMed ID: 29444397
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational Approaches for Predicting Binding Partners, Interface Residues, and Binding Affinity of Protein-Protein Complexes.
    Yugandhar K; Gromiha MM
    Methods Mol Biol; 2017; 1484():237-253. PubMed ID: 27787830
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProBAPred: Inferring protein-protein binding affinity by incorporating protein sequence and structural features.
    Lu B; Li C; Chen Q; Song J
    J Bioinform Comput Biol; 2018 Aug; 16(4):1850011. PubMed ID: 29954286
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural modeling of protein complexes: Current capabilities and challenges.
    Dapkūnas J; Olechnovič K; Venclovas Č
    Proteins; 2019 Dec; 87(12):1222-1232. PubMed ID: 31294859
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Soft regions of protein surface are potent for stable dimer formation.
    Hadi-Alijanvand H
    J Biomol Struct Dyn; 2020 Aug; 38(12):3587-3598. PubMed ID: 31476974
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A multiscale approach to predicting affinity changes in protein-protein interfaces.
    Dourado DF; Flores SC
    Proteins; 2014 Oct; 82(10):2681-90. PubMed ID: 24975440
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DockTrina: docking triangular protein trimers.
    Popov P; Ritchie DW; Grudinin S
    Proteins; 2014 Jan; 82(1):34-44. PubMed ID: 23775700
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparing interfacial dynamics in protein-protein complexes: an elastic network approach.
    Zen A; Micheletti C; Keskin O; Nussinov R
    BMC Struct Biol; 2010 Aug; 10():26. PubMed ID: 20691107
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identifying the topology of protein complexes from affinity purification assays.
    Friedel CC; Zimmer R
    Bioinformatics; 2009 Aug; 25(16):2140-6. PubMed ID: 19505940
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ProMate: a structure based prediction program to identify the location of protein-protein binding sites.
    Neuvirth H; Raz R; Schreiber G
    J Mol Biol; 2004 Apr; 338(1):181-99. PubMed ID: 15050833
    [TBL] [Abstract][Full Text] [Related]  

  • 12. On the mechanisms of protein interactions: predicting their affinity from unbound tertiary structures.
    Marín-López MA; Planas-Iglesias J; Aguirre-Plans J; Bonet J; Garcia-Garcia J; Fernandez-Fuentes N; Oliva B
    Bioinformatics; 2018 Feb; 34(4):592-598. PubMed ID: 29028891
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected.
    Gao M; Skolnick J
    Proc Natl Acad Sci U S A; 2010 Dec; 107(52):22517-22. PubMed ID: 21149688
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BindML/BindML+: Detecting Protein-Protein Interaction Interface Propensity from Amino Acid Substitution Patterns.
    Wei Q; La D; Kihara D
    Methods Mol Biol; 2017; 1529():279-289. PubMed ID: 27914057
    [TBL] [Abstract][Full Text] [Related]  

  • 15. G-LoSA for Prediction of Protein-Ligand Binding Sites and Structures.
    Lee HS; Im W
    Methods Mol Biol; 2017; 1611():97-108. PubMed ID: 28451974
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modeling the assembly order of multimeric heteroprotein complexes.
    Peterson LX; Togawa Y; Esquivel-Rodriguez J; Terashi G; Christoffer C; Roy A; Shin WH; Kihara D
    PLoS Comput Biol; 2018 Jan; 14(1):e1005937. PubMed ID: 29329283
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrating computational methods and experimental data for understanding the recognition mechanism and binding affinity of protein-protein complexes.
    Gromiha MM; Yugandhar K
    Prog Biophys Mol Biol; 2017 Sep; 128():33-38. PubMed ID: 28069340
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SitesIdentify: a protein functional site prediction tool.
    Bray T; Chan P; Bougouffa S; Greaves R; Doig AJ; Warwicker J
    BMC Bioinformatics; 2009 Nov; 10():379. PubMed ID: 19922660
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PRODIGY: a web server for predicting the binding affinity of protein-protein complexes.
    Xue LC; Rodrigues JP; Kastritis PL; Bonvin AM; Vangone A
    Bioinformatics; 2016 Dec; 32(23):3676-3678. PubMed ID: 27503228
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Feature selection and classification of protein-protein complexes based on their binding affinities using machine learning approaches.
    Yugandhar K; Gromiha MM
    Proteins; 2014 Sep; 82(9):2088-96. PubMed ID: 24648146
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.