BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 31797599)

  • 1. PhySigs: Phylogenetic Inference of Mutational Signature Dynamics.
    Christensen S; Leiserson MDM; El-Kebir M
    Pac Symp Biocomput; 2020; 25():226-237. PubMed ID: 31797599
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.
    Toosi H; Moeini A; Hajirasouliha I
    BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling clinical and molecular covariates of mutational process activity in cancer.
    Robinson W; Sharan R; Leiserson MDM
    Bioinformatics; 2019 Jul; 35(14):i492-i500. PubMed ID: 31510643
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.
    Sundermann LK; Wintersinger J; Rätsch G; Stoye J; Morris Q
    PLoS Comput Biol; 2021 Jan; 17(1):e1008400. PubMed ID: 33465079
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CaMuS: simultaneous fitting and de novo imputation of cancer mutational signature.
    Cartolano M; Abedpour N; Achter V; Yang TP; Ackermann S; Fischer M; Peifer M
    Sci Rep; 2020 Nov; 10(1):19316. PubMed ID: 33168834
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
    Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
    BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A sequential Monte Carlo algorithm for inference of subclonal structure in cancer.
    Ogundijo OE; Zhu K; Wang X; Anastassiou D
    PLoS One; 2019; 14(1):e0211213. PubMed ID: 30682127
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Summarizing the solution space in tumor phylogeny inference by multiple consensus trees.
    Aguse N; Qi Y; El-Kebir M
    Bioinformatics; 2019 Jul; 35(14):i408-i416. PubMed ID: 31510657
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analysis of mutational signatures in C. elegans: Implications for cancer genome analysis.
    Meier B; Volkova NV; Gerstung M; Gartner A
    DNA Repair (Amst); 2020 Nov; 95():102957. PubMed ID: 32980770
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data.
    Abécassis J; Reyal F; Vert JP
    Nat Commun; 2021 Sep; 12(1):5352. PubMed ID: 34504064
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
    El-Kebir M
    Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor Samples.
    Myers MA; Satas G; Raphael BJ
    Cell Syst; 2019 Jun; 8(6):514-522.e5. PubMed ID: 31229560
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer.
    Wojtowicz D; Sason I; Huang X; Kim YA; Leiserson MDM; Przytycka TM; Sharan R
    Genome Med; 2019 Jul; 11(1):49. PubMed ID: 31349863
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data.
    Miura S; Vu T; Deng J; Buturla T; Oladeinde O; Choi J; Kumar S
    Sci Rep; 2020 Feb; 10(1):3498. PubMed ID: 32103044
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.
    Zaccaria S; El-Kebir M; Klau GW; Raphael BJ
    J Comput Biol; 2018 Jul; 25(7):689-708. PubMed ID: 29658782
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
    Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
    Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
    Shiraishi Y; Tremmel G; Miyano S; Stephens M
    PLoS Genet; 2015 Dec; 11(12):e1005657. PubMed ID: 26630308
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting evolutionary patterns of cancers using consensus trees.
    Christensen S; Kim J; Chia N; Koyejo O; El-Kebir M
    Bioinformatics; 2020 Dec; 36(Suppl_2):i684-i691. PubMed ID: 33381820
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to Mutational Signatures.
    Wojtowicz D; Leiserson MDM; Sharan R; Przytycka TM
    Pac Symp Biocomput; 2020; 25():262-273. PubMed ID: 31797602
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Joint inference of cell lineage and mitochondrial evolution from single-cell sequencing data.
    Sashittal P; Chen V; Pasarkar A; Raphael BJ
    Bioinformatics; 2024 Jun; 40(Supplement_1):i218-i227. PubMed ID: 38940122
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.