137 related articles for article (PubMed ID: 31797599)
1. PhySigs: Phylogenetic Inference of Mutational Signature Dynamics.
Christensen S; Leiserson MDM; El-Kebir M
Pac Symp Biocomput; 2020; 25():226-237. PubMed ID: 31797599
[TBL] [Abstract][Full Text] [Related]
2. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.
Toosi H; Moeini A; Hajirasouliha I
BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637
[TBL] [Abstract][Full Text] [Related]
3. Modeling clinical and molecular covariates of mutational process activity in cancer.
Robinson W; Sharan R; Leiserson MDM
Bioinformatics; 2019 Jul; 35(14):i492-i500. PubMed ID: 31510643
[TBL] [Abstract][Full Text] [Related]
4. Reconstructing tumor evolutionary histories and clone trees in polynomial-time with SubMARine.
Sundermann LK; Wintersinger J; Rätsch G; Stoye J; Morris Q
PLoS Comput Biol; 2021 Jan; 17(1):e1008400. PubMed ID: 33465079
[TBL] [Abstract][Full Text] [Related]
5. CaMuS: simultaneous fitting and de novo imputation of cancer mutational signature.
Cartolano M; Abedpour N; Achter V; Yang TP; Ackermann S; Fischer M; Peifer M
Sci Rep; 2020 Nov; 10(1):19316. PubMed ID: 33168834
[TBL] [Abstract][Full Text] [Related]
6. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
[TBL] [Abstract][Full Text] [Related]
7. A sequential Monte Carlo algorithm for inference of subclonal structure in cancer.
Ogundijo OE; Zhu K; Wang X; Anastassiou D
PLoS One; 2019; 14(1):e0211213. PubMed ID: 30682127
[TBL] [Abstract][Full Text] [Related]
8. Summarizing the solution space in tumor phylogeny inference by multiple consensus trees.
Aguse N; Qi Y; El-Kebir M
Bioinformatics; 2019 Jul; 35(14):i408-i416. PubMed ID: 31510657
[TBL] [Abstract][Full Text] [Related]
9. Analysis of mutational signatures in C. elegans: Implications for cancer genome analysis.
Meier B; Volkova NV; Gerstung M; Gartner A
DNA Repair (Amst); 2020 Nov; 95():102957. PubMed ID: 32980770
[TBL] [Abstract][Full Text] [Related]
10. CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data.
Abécassis J; Reyal F; Vert JP
Nat Commun; 2021 Sep; 12(1):5352. PubMed ID: 34504064
[TBL] [Abstract][Full Text] [Related]
11. SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error.
El-Kebir M
Bioinformatics; 2018 Sep; 34(17):i671-i679. PubMed ID: 30423070
[TBL] [Abstract][Full Text] [Related]
12. CALDER: Inferring Phylogenetic Trees from Longitudinal Tumor Samples.
Myers MA; Satas G; Raphael BJ
Cell Syst; 2019 Jun; 8(6):514-522.e5. PubMed ID: 31229560
[TBL] [Abstract][Full Text] [Related]
13. Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer.
Wojtowicz D; Sason I; Huang X; Kim YA; Leiserson MDM; Przytycka TM; Sharan R
Genome Med; 2019 Jul; 11(1):49. PubMed ID: 31349863
[TBL] [Abstract][Full Text] [Related]
14. Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data.
Miura S; Vu T; Deng J; Buturla T; Oladeinde O; Choi J; Kumar S
Sci Rep; 2020 Feb; 10(1):3498. PubMed ID: 32103044
[TBL] [Abstract][Full Text] [Related]
15. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples.
Zaccaria S; El-Kebir M; Klau GW; Raphael BJ
J Comput Biol; 2018 Jul; 25(7):689-708. PubMed ID: 29658782
[TBL] [Abstract][Full Text] [Related]
16. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
[TBL] [Abstract][Full Text] [Related]
17. A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures.
Shiraishi Y; Tremmel G; Miyano S; Stephens M
PLoS Genet; 2015 Dec; 11(12):e1005657. PubMed ID: 26630308
[TBL] [Abstract][Full Text] [Related]
18. Detecting evolutionary patterns of cancers using consensus trees.
Christensen S; Kim J; Chia N; Koyejo O; El-Kebir M
Bioinformatics; 2020 Dec; 36(Suppl_2):i684-i691. PubMed ID: 33381820
[TBL] [Abstract][Full Text] [Related]
19. DNA Repair Footprint Uncovers Contribution of DNA Repair Mechanism to Mutational Signatures.
Wojtowicz D; Leiserson MDM; Sharan R; Przytycka TM
Pac Symp Biocomput; 2020; 25():262-273. PubMed ID: 31797602
[TBL] [Abstract][Full Text] [Related]
20. Joint inference of cell lineage and mitochondrial evolution from single-cell sequencing data.
Sashittal P; Chen V; Pasarkar A; Raphael BJ
Bioinformatics; 2024 Jun; 40(Supplement_1):i218-i227. PubMed ID: 38940122
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]