These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. %MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding. Rodriguez A; Wright G; Emrich S; Clark PL Protein Sci; 2018 Jan; 27(1):356-362. PubMed ID: 29090506 [TBL] [Abstract][Full Text] [Related]
6. E-CAI: a novel server to estimate an expected value of Codon Adaptation Index (eCAI). Puigbò P; Bravo IG; Garcia-Vallvé S BMC Bioinformatics; 2008 Jan; 9():65. PubMed ID: 18230160 [TBL] [Abstract][Full Text] [Related]
7. Preference of A/T ending codons in mitochondrial ATP6 gene under phylum Platyhelminthes: Codon usage of ATP6 gene in Platyhelminthes. Mazumder GA; Uddin A; Chakraborty S Mol Biochem Parasitol; 2018 Oct; 225():15-26. PubMed ID: 30149040 [TBL] [Abstract][Full Text] [Related]
8. Comparative genome-wide analysis of codon usage of different bacterial species infecting Oryza sativa. Vasanthi S; Dass JFP J Cell Biochem; 2018 Nov; 119(11):9346-9356. PubMed ID: 30105828 [TBL] [Abstract][Full Text] [Related]
9. Synonymous Dinucleotide Usage: A Codon-Aware Metric for Quantifying Dinucleotide Representation in Viruses. Lytras S; Hughes J Viruses; 2020 Apr; 12(4):. PubMed ID: 32325924 [TBL] [Abstract][Full Text] [Related]
10. New insights into the factors affecting synonymous codon usage in human infecting Plasmodium species. Gajbhiye S; Patra PK; Yadav MK Acta Trop; 2017 Dec; 176():29-33. PubMed ID: 28751162 [TBL] [Abstract][Full Text] [Related]
11. Codon usage in highly expressed genes of Haemophillus influenzae and Mycobacterium tuberculosis: translational selection versus mutational bias. Pan A; Dutta C; Das J Gene; 1998 Jul; 215(2):405-13. PubMed ID: 9714839 [TBL] [Abstract][Full Text] [Related]
12. CAIcal: a combined set of tools to assess codon usage adaptation. Puigbò P; Bravo IG; Garcia-Vallve S Biol Direct; 2008 Sep; 3():38. PubMed ID: 18796141 [TBL] [Abstract][Full Text] [Related]
13. The Codon Statistics Database: A Database of Codon Usage Bias. Subramanian K; Payne B; Feyertag F; Alvarez-Ponce D Mol Biol Evol; 2022 Aug; 39(8):. PubMed ID: 35859338 [TBL] [Abstract][Full Text] [Related]
14. Studies on synonymous codon and amino acid usages in Aeromonas hydrophila phage Aeh1: architecture of protein-coding genes and therapeutic implications. Sau K J Microbiol Immunol Infect; 2007 Feb; 40(1):24-33. PubMed ID: 17332903 [TBL] [Abstract][Full Text] [Related]
15. Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage. Trotta E BMC Genomics; 2016 May; 17():366. PubMed ID: 27188984 [TBL] [Abstract][Full Text] [Related]
20. Genome-wide comparison of codon usage dynamics in mitochondrial genes across different species of amphibian genus Bombina. Barbhuiya PA; Uddin A; Chakraborty S J Exp Zool B Mol Dev Evol; 2019 May; 332(3-4):99-112. PubMed ID: 31033182 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]