These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

254 related articles for article (PubMed ID: 31802105)

  • 1. Systematic evaluation of differential splicing tools for RNA-seq studies.
    Mehmood A; Laiho A; Venäläinen MS; McGlinchey AJ; Wang N; Elo LL
    Brief Bioinform; 2020 Dec; 21(6):2052-2065. PubMed ID: 31802105
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level.
    Jiang M; Zhang S; Yin H; Zhuo Z; Meng G
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37020334
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Differential splicing analysis based on isoforms expression with NBSplice.
    Merino GA; Fernández EA
    J Biomed Inform; 2020 Mar; 103():103378. PubMed ID: 31972288
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Identification of Alternative Splicing and Polyadenylation in RNA-seq Data.
    Dixit G; Zheng Y; Parker B; Wen J
    J Vis Exp; 2021 Jun; (172):. PubMed ID: 34251362
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A generalized dSpliceType framework to detect differential splicing and differential expression events using RNA-Seq.
    Zhu D; Deng N; Bai C
    IEEE Trans Nanobioscience; 2015 Mar; 14(2):192-202. PubMed ID: 25680210
    [TBL] [Abstract][Full Text] [Related]  

  • 6. rMATS-turbo: an efficient and flexible computational tool for alternative splicing analysis of large-scale RNA-seq data.
    Wang Y; Xie Z; Kutschera E; Adams JI; Kadash-Edmondson KE; Xing Y
    Nat Protoc; 2024 Apr; 19(4):1083-1104. PubMed ID: 38396040
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.
    Raghavachari N; Barb J; Yang Y; Liu P; Woodhouse K; Levy D; O'Donnell CJ; Munson PJ; Kato GJ
    BMC Med Genomics; 2012 Jun; 5():28. PubMed ID: 22747986
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.
    Merino GA; Conesa A; Fernández EA
    Brief Bioinform; 2019 Mar; 20(2):471-481. PubMed ID: 29040385
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identifying differential exon splicing using linear models and correlation coefficients.
    Shah SH; Pallas JA
    BMC Bioinformatics; 2009 Jan; 10():26. PubMed ID: 19154578
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identifying differentially spliced genes from two groups of RNA-seq samples.
    Wang W; Qin Z; Feng Z; Wang X; Zhang X
    Gene; 2013 Apr; 518(1):164-70. PubMed ID: 23228854
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data.
    Feng H; Li T; Zhang X
    BMC Genomics; 2018 Aug; 19(Suppl 6):564. PubMed ID: 30367578
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq.
    Hartley SW; Mullikin JC
    Nucleic Acids Res; 2016 Sep; 44(15):e127. PubMed ID: 27257077
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
    Hu Y; Wang K; Li M
    PLoS Comput Biol; 2020 Jun; 16(6):e1007925. PubMed ID: 32502143
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational comparison of common event-based differential splicing tools: practical considerations for laboratory researchers.
    Muller IB; Meijers S; Kampstra P; van Dijk S; van Elswijk M; Lin M; Wojtuszkiewicz AM; Jansen G; de Jonge R; Cloos J
    BMC Bioinformatics; 2021 Jun; 22(1):347. PubMed ID: 34174808
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PSI-Sigma: a comprehensive splicing-detection method for short-read and long-read RNA-seq analysis.
    Lin KT; Krainer AR
    Bioinformatics; 2019 Dec; 35(23):5048-5054. PubMed ID: 31135034
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
    Li Y; Rao X; Mattox WW; Amos CI; Liu B
    PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.