435 related articles for article (PubMed ID: 31805292)
1. Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts.
Mitov V; Bartoszek K; Asimomitis G; Stadler T
Theor Popul Biol; 2020 Feb; 131():66-78. PubMed ID: 31805292
[TBL] [Abstract][Full Text] [Related]
2. Automatic generation of evolutionary hypotheses using mixed Gaussian phylogenetic models.
Mitov V; Bartoszek K; Stadler T
Proc Natl Acad Sci U S A; 2019 Aug; 116(34):16921-16926. PubMed ID: 31375629
[TBL] [Abstract][Full Text] [Related]
3. Inference of Adaptive Shifts for Multivariate Correlated Traits.
Bastide P; Ané C; Robin S; Mariadassou M
Syst Biol; 2018 Jul; 67(4):662-680. PubMed ID: 29385556
[TBL] [Abstract][Full Text] [Related]
4. A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.
Ho Ls; Ané C
Syst Biol; 2014 May; 63(3):397-408. PubMed ID: 24500037
[TBL] [Abstract][Full Text] [Related]
5. Testing for phylogenetic signal in comparative data: behavioral traits are more labile.
Blomberg SP; Garland T; Ives AR
Evolution; 2003 Apr; 57(4):717-45. PubMed ID: 12778543
[TBL] [Abstract][Full Text] [Related]
6. Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees.
Crawford FW; Suchard MA
Syst Biol; 2013 May; 62(3):439-55. PubMed ID: 23417679
[TBL] [Abstract][Full Text] [Related]
7. Simulation-based likelihood approach for evolutionary models of phenotypic traits on phylogeny.
Kutsukake N; Innan H
Evolution; 2013 Feb; 67(2):355-67. PubMed ID: 23356609
[TBL] [Abstract][Full Text] [Related]
8. Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation.
Mar JC; Harlow TJ; Ragan MA
BMC Evol Biol; 2005 Jan; 5():8. PubMed ID: 15676079
[TBL] [Abstract][Full Text] [Related]
9. Phylogenetic analysis using Lévy processes: finding jumps in the evolution of continuous traits.
Landis MJ; Schraiber JG; Liang M
Syst Biol; 2013 Mar; 62(2):193-204. PubMed ID: 23034385
[TBL] [Abstract][Full Text] [Related]
10. Rapid maximum likelihood ancestral state reconstruction of continuous characters: A rerooting-free algorithm.
Goolsby EW
Ecol Evol; 2017 Apr; 7(8):2791-2797. PubMed ID: 28428869
[TBL] [Abstract][Full Text] [Related]
11. Bayesian inference of phylogenetic networks from bi-allelic genetic markers.
Zhu J; Wen D; Yu Y; Meudt HM; Nakhleh L
PLoS Comput Biol; 2018 Jan; 14(1):e1005932. PubMed ID: 29320496
[TBL] [Abstract][Full Text] [Related]
12. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees.
Izquierdo-Carrasco F; Smith SA; Stamatakis A
BMC Bioinformatics; 2011 Dec; 12():470. PubMed ID: 22165866
[TBL] [Abstract][Full Text] [Related]
13. Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics.
Ji X; Zhang Z; Holbrook A; Nishimura A; Baele G; Rambaut A; Lemey P; Suchard MA
Mol Biol Evol; 2020 Oct; 37(10):3047-3060. PubMed ID: 32458974
[TBL] [Abstract][Full Text] [Related]
14. Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations.
Bastide P; Solís-Lemus C; Kriebel R; William Sparks K; Ané C
Syst Biol; 2018 Sep; 67(5):800-820. PubMed ID: 29701821
[TBL] [Abstract][Full Text] [Related]
15. Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration.
Gavryushkina A; Welch D; Stadler T; Drummond AJ
PLoS Comput Biol; 2014 Dec; 10(12):e1003919. PubMed ID: 25474353
[TBL] [Abstract][Full Text] [Related]
16. Bayesian Analyses of Comparative Data with the Ornstein-Uhlenbeck Model: Potential Pitfalls.
Cornuault J
Syst Biol; 2022 Oct; 71(6):1524-1540. PubMed ID: 35583306
[TBL] [Abstract][Full Text] [Related]
17. Phylogenomic comparative methods: Accurate evolutionary inferences in the presence of gene tree discordance.
Hibbins MS; Breithaupt LC; Hahn MW
Proc Natl Acad Sci U S A; 2023 May; 120(22):e2220389120. PubMed ID: 37216509
[TBL] [Abstract][Full Text] [Related]
18. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
19. Hessian calculation for phylogenetic likelihood based on the pruning algorithm and its applications.
Kenney T; Gu H
Stat Appl Genet Mol Biol; 2012 Sep; 11(4):Article 14. PubMed ID: 23023698
[TBL] [Abstract][Full Text] [Related]
20. Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations.
Kobert K; Stamatakis A; Flouri T
Syst Biol; 2017 Mar; 66(2):205-217. PubMed ID: 27576546
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]