BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

354 related articles for article (PubMed ID: 31805884)

  • 1. The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues.
    Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
    BMC Cancer; 2019 Dec; 19(1):1189. PubMed ID: 31805884
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Targeted RNAseq assay incorporating unique molecular identifiers for improved quantification of gene expression signatures and transcribed mutation fraction in fixed tumor samples.
    Fu C; Marczyk M; Samuels M; Trevarton AJ; Qu J; Lau R; Du L; Pappas T; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
    BMC Cancer; 2021 Feb; 21(1):114. PubMed ID: 33541297
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Performance comparison of three DNA extraction kits on human whole-exome data from formalin-fixed paraffin-embedded normal and tumor samples.
    Bonnet E; Moutet ML; Baulard C; Bacq-Daian D; Sandron F; Mesrob L; Fin B; Delépine M; Palomares MA; Jubin C; Blanché H; Meyer V; Boland A; Olaso R; Deleuze JF
    PLoS One; 2018; 13(4):e0195471. PubMed ID: 29621323
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Next-generation sequencing of RNA and DNA isolated from paired fresh-frozen and formalin-fixed paraffin-embedded samples of human cancer and normal tissue.
    Hedegaard J; Thorsen K; Lund MK; Hein AM; Hamilton-Dutoit SJ; Vang S; Nordentoft I; Birkenkamp-Demtröder K; Kruhøffer M; Hager H; Knudsen B; Andersen CL; Sørensen KD; Pedersen JS; Ørntoft TF; Dyrskjøt L
    PLoS One; 2014; 9(5):e98187. PubMed ID: 24878701
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue.
    Mittempergher L; de Ronde JJ; Nieuwland M; Kerkhoven RM; Simon I; Rutgers EJ; Wessels LF; Van't Veer LJ
    PLoS One; 2011 Feb; 6(2):e17163. PubMed ID: 21347257
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues.
    Kibriya MG; Jasmine F; Roy S; Paul-Brutus RM; Argos M; Ahsan H
    BMC Genomics; 2010 Nov; 11():622. PubMed ID: 21059268
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assessment of stained direct cytology smears of breast cancer for whole transcriptome and targeted messenger RNA sequencing.
    Marczyk M; Fu C; Lau R; Du L; Trevarton AJ; Sinn BV; Gould RE; Pusztai L; Hatzis C; Symmans WF
    Cancer Cytopathol; 2023 May; 131(5):289-299. PubMed ID: 36650408
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparison of triple-negative breast cancer molecular subtyping using RNA from matched fresh-frozen versus formalin-fixed paraffin-embedded tissue.
    Jovanović B; Sheng Q; Seitz RS; Lawrence KD; Morris SW; Thomas LR; Hout DR; Schweitzer BL; Guo Y; Pietenpol JA; Lehmann BD
    BMC Cancer; 2017 Apr; 17(1):241. PubMed ID: 28376728
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Robust transcriptional tumor signatures applicable to both formalin-fixed paraffin-embedded and fresh-frozen samples.
    Chen R; Guan Q; Cheng J; He J; Liu H; Cai H; Hong G; Zhang J; Li N; Ao L; Guo Z
    Oncotarget; 2017 Jan; 8(4):6652-6662. PubMed ID: 28036264
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.
    Jackson AF; Williams A; Moffat I; Phillips SL; Recio L; Waters MD; Lambert IB; Yauk CL
    J Pharmacol Toxicol Methods; 2013; 68(2):260-268. PubMed ID: 23458726
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays.
    Jose V; Fumagalli D; Rothé F; Majjaj S; Loi S; Michiels S; Sotiriou C
    PLoS One; 2018; 13(8):e0203346. PubMed ID: 30169535
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reliable gene expression profiling of formalin-fixed paraffin-embedded breast cancer tissue (FFPE) using cDNA-mediated annealing, extension, selection, and ligation whole-genome (DASL WG) assay.
    Iddawela M; Rueda OM; Klarqvist M; Graf S; Earl HM; Caldas C
    BMC Med Genomics; 2016 Aug; 9(1):54. PubMed ID: 27542606
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples.
    Mattesen TB; Andersen CL; Bramsen JB
    Clin Epigenetics; 2021 Jan; 13(1):20. PubMed ID: 33509261
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Clinical relevance of DNA microarray analyses using archival formalin-fixed paraffin-embedded breast cancer specimens.
    Sadi AM; Wang DY; Youngson BJ; Miller N; Boerner S; Done SJ; Leong WL
    BMC Cancer; 2011 Jun; 11():253:1-13. PubMed ID: 21679412
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Performance comparison of two commercial human whole-exome capture systems on formalin-fixed paraffin-embedded lung adenocarcinoma samples.
    Bonfiglio S; Vanni I; Rossella V; Truini A; Lazarevic D; Dal Bello MG; Alama A; Mora M; Rijavec E; Genova C; Cittaro D; Grossi F; Coco S
    BMC Cancer; 2016 Aug; 16(1):692. PubMed ID: 27578032
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Systematic evaluation of RNA quality, microarray data reliability and pathway analysis in fresh, fresh frozen and formalin-fixed paraffin-embedded tissue samples.
    Wimmer I; Tröscher AR; Brunner F; Rubino SJ; Bien CG; Weiner HL; Lassmann H; Bauer J
    Sci Rep; 2018 Apr; 8(1):6351. PubMed ID: 29679021
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ribonucleic acid extraction from archival formalin fixed paraffin embedded myocardial tissues for gene expression and pathogen detection.
    Sharma M; Mishra B; Vandana ; Saikia UN; Bahl A; Ratho RK; Talwar KK
    J Clin Lab Anal; 2012 Jul; 26(4):279-85. PubMed ID: 22811362
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Gene expression profiles of gliomas in formalin-fixed paraffin-embedded material.
    Gravendeel LA; de Rooi JJ; Eilers PH; van den Bent MJ; Sillevis Smitt PA; French PJ
    Br J Cancer; 2012 Jan; 106(3):538-45. PubMed ID: 22187034
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples.
    Bhagwate AV; Liu Y; Winham SJ; McDonough SJ; Stallings-Mann ML; Heinzen EP; Davila JI; Vierkant RA; Hoskin TL; Frost M; Carter JM; Radisky DC; Cunningham JM; Degnim AC; Wang C
    BMC Genomics; 2019 Sep; 20(1):689. PubMed ID: 31477010
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Whole-Transcriptome profiling of formalin-fixed, paraffin-embedded renal cell carcinoma by RNA-seq.
    Li P; Conley A; Zhang H; Kim HL
    BMC Genomics; 2014 Dec; 15(1):1087. PubMed ID: 25495041
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.