157 related articles for article (PubMed ID: 31808797)
1. pyDockEneRes: per-residue decomposition of protein-protein docking energy.
Romero-Durana M; Jiménez-García B; Fernández-Recio J
Bioinformatics; 2020 Apr; 36(7):2284-2285. PubMed ID: 31808797
[TBL] [Abstract][Full Text] [Related]
2. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
Jiménez-García B; Pons C; Fernández-Recio J
Bioinformatics; 2013 Jul; 29(13):1698-9. PubMed ID: 23661696
[TBL] [Abstract][Full Text] [Related]
3. pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
Jiménez-García B; Pons C; Svergun DI; Bernadó P; Fernández-Recio J
Nucleic Acids Res; 2015 Jul; 43(W1):W356-61. PubMed ID: 25897115
[TBL] [Abstract][Full Text] [Related]
4. Modeling of Protein Complexes and Molecular Assemblies with pyDock.
Rosell M; Rodríguez-Lumbreras LA; Fernández-Recio J
Methods Mol Biol; 2020; 2165():175-198. PubMed ID: 32621225
[TBL] [Abstract][Full Text] [Related]
5. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
Vangone A; Rodrigues JP; Xue LC; van Zundert GC; Geng C; Kurkcuoglu Z; Nellen M; Narasimhan S; Karaca E; van Dijk M; Melquiond AS; Visscher KM; Trellet M; Kastritis PL; Bonvin AM
Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
[TBL] [Abstract][Full Text] [Related]
6. CCharPPI web server: computational characterization of protein-protein interactions from structure.
Moal IH; Jiménez-García B; Fernández-Recio J
Bioinformatics; 2015 Jan; 31(1):123-5. PubMed ID: 25183488
[TBL] [Abstract][Full Text] [Related]
7. iScore: a novel graph kernel-based function for scoring protein-protein docking models.
Geng C; Jung Y; Renaud N; Honavar V; Bonvin AMJJ; Xue LC
Bioinformatics; 2020 Jan; 36(1):112-121. PubMed ID: 31199455
[TBL] [Abstract][Full Text] [Related]
8. Structural Characterization of Protein-Protein Interactions with pyDockSAXS.
Jiménez-García B; Bernadó P; Fernández-Recio J
Methods Mol Biol; 2020; 2112():131-144. PubMed ID: 32006283
[TBL] [Abstract][Full Text] [Related]
9. LightDock: a new multi-scale approach to protein-protein docking.
Jiménez-García B; Roel-Touris J; Romero-Durana M; Vidal M; Jiménez-González D; Fernández-Recio J
Bioinformatics; 2018 Jan; 34(1):49-55. PubMed ID: 28968719
[TBL] [Abstract][Full Text] [Related]
10. Structural and energy determinants in protein-RNA docking.
Pérez-Cano L; Romero-Durana M; Fernández-Recio J
Methods; 2017 Apr; 118-119():163-170. PubMed ID: 27816523
[TBL] [Abstract][Full Text] [Related]
11. Prediction of protein-binding areas by small-world residue networks and application to docking.
Pons C; Glaser F; Fernandez-Recio J
BMC Bioinformatics; 2011 Sep; 12():378. PubMed ID: 21943333
[TBL] [Abstract][Full Text] [Related]
12. Prediction and scoring of docking poses with pyDock.
Grosdidier S; Pons C; Solernou A; Fernández-Recio J
Proteins; 2007 Dec; 69(4):852-8. PubMed ID: 17876821
[TBL] [Abstract][Full Text] [Related]
13. Pairwise and Multi-chain Protein Docking Enhanced Using LZerD Web Server.
Harini K; Christoffer C; Gromiha MM; Kihara D
Methods Mol Biol; 2023; 2690():355-373. PubMed ID: 37450159
[TBL] [Abstract][Full Text] [Related]
14. Modeling Binding Affinity of Pathological Mutations for Computational Protein Design.
Romero-Durana M; Pallara C; Glaser F; Fernández-Recio J
Methods Mol Biol; 2017; 1529():139-159. PubMed ID: 27914049
[TBL] [Abstract][Full Text] [Related]
15. pyDockCG: new coarse-grained potential for protein-protein docking.
Solernou A; Fernandez-Recio J
J Phys Chem B; 2011 May; 115(19):6032-9. PubMed ID: 21506617
[TBL] [Abstract][Full Text] [Related]
16. Docking software performance in protein-glycosaminoglycan systems.
Uciechowska-Kaczmarzyk U; Chauvot de Beauchene I; Samsonov SA
J Mol Graph Model; 2019 Jul; 90():42-50. PubMed ID: 30959268
[TBL] [Abstract][Full Text] [Related]
17. Identification of hot-spot residues in protein-protein interactions by computational docking.
Grosdidier S; Fernández-Recio J
BMC Bioinformatics; 2008 Oct; 9():447. PubMed ID: 18939967
[TBL] [Abstract][Full Text] [Related]
18. Scoring by intermolecular pairwise propensities of exposed residues (SIPPER): a new efficient potential for protein-protein docking.
Pons C; Talavera D; de la Cruz X; Orozco M; Fernandez-Recio J
J Chem Inf Model; 2011 Feb; 51(2):370-7. PubMed ID: 21214199
[TBL] [Abstract][Full Text] [Related]
19. pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking.
Cheng TM; Blundell TL; Fernandez-Recio J
Proteins; 2007 Aug; 68(2):503-15. PubMed ID: 17444519
[TBL] [Abstract][Full Text] [Related]
20. HawkDock: a web server to predict and analyze the protein-protein complex based on computational docking and MM/GBSA.
Weng G; Wang E; Wang Z; Liu H; Zhu F; Li D; Hou T
Nucleic Acids Res; 2019 Jul; 47(W1):W322-W330. PubMed ID: 31106357
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]