250 related articles for article (PubMed ID: 31808801)
21. A local multiple alignment method for detection of non-coding RNA sequences.
Tabei Y; Asai K
Bioinformatics; 2009 Jun; 25(12):1498-505. PubMed ID: 19376823
[TBL] [Abstract][Full Text] [Related]
22. GraphClust: alignment-free structural clustering of local RNA secondary structures.
Heyne S; Costa F; Rose D; Backofen R
Bioinformatics; 2012 Jun; 28(12):i224-32. PubMed ID: 22689765
[TBL] [Abstract][Full Text] [Related]
23. De novo discovery of structured ncRNA motifs in genomic sequences.
Ruzzo WL; Gorodkin J
Methods Mol Biol; 2014; 1097():303-18. PubMed ID: 24639166
[TBL] [Abstract][Full Text] [Related]
24. From structure prediction to genomic screens for novel non-coding RNAs.
Gorodkin J; Hofacker IL
PLoS Comput Biol; 2011 Aug; 7(8):e1002100. PubMed ID: 21829340
[TBL] [Abstract][Full Text] [Related]
25. Pairwise RNA secondary structure alignment with conserved stem pattern.
Chiu JK; Chen YP
Bioinformatics; 2015 Dec; 31(24):3914-21. PubMed ID: 26275897
[TBL] [Abstract][Full Text] [Related]
26. The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA; Fallmann J; Yusuf D; Will S; Erxleben A; Eggenhofer F; Houwaart T; Batut B; Videm P; Bagnacani A; Wolfien M; Lott SC; Hoogstrate Y; Hess WR; Wolkenhauer O; Hoffmann S; Akalin A; Ohler U; Stadler PF; Backofen R
Nucleic Acids Res; 2017 Jul; 45(W1):W560-W566. PubMed ID: 28582575
[TBL] [Abstract][Full Text] [Related]
27. Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.
Tripathi KP; Evangelista D; Zuccaro A; Guarracino MR
PLoS One; 2015; 10(11):e0140268. PubMed ID: 26581084
[TBL] [Abstract][Full Text] [Related]
28. ARTS: alignment of RNA tertiary structures.
Dror O; Nussinov R; Wolfson H
Bioinformatics; 2005 Sep; 21 Suppl 2():ii47-53. PubMed ID: 16204124
[TBL] [Abstract][Full Text] [Related]
29. Identifying structural noncoding RNAs using RNAz.
Washietl S; Hofacker IL
Curr Protoc Bioinformatics; 2007 Sep; Chapter 12():Unit 12.7. PubMed ID: 18428784
[TBL] [Abstract][Full Text] [Related]
30. Designing secondary structure profiles for fast ncRNA identification.
Sun Y; Buhler J
Comput Syst Bioinformatics Conf; 2008; 7():145-56. PubMed ID: 19642276
[TBL] [Abstract][Full Text] [Related]
31. Genome-Wide Approaches for RNA Structure Probing.
Silverman IM; Berkowitz ND; Gosai SJ; Gregory BD
Adv Exp Med Biol; 2016; 907():29-59. PubMed ID: 27256381
[TBL] [Abstract][Full Text] [Related]
32. MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.
Lindgreen S; Gardner PP; Krogh A
Bioinformatics; 2007 Dec; 23(24):3304-11. PubMed ID: 18006551
[TBL] [Abstract][Full Text] [Related]
33. RILogo: visualizing RNA-RNA interactions.
Menzel P; Seemann SE; Gorodkin J
Bioinformatics; 2012 Oct; 28(19):2523-6. PubMed ID: 22826541
[TBL] [Abstract][Full Text] [Related]
34. Sequence and structure analysis of noncoding RNAs.
Washietl S
Methods Mol Biol; 2010; 609():285-306. PubMed ID: 20221926
[TBL] [Abstract][Full Text] [Related]
35. RNAdetect: efficient computational detection of novel non-coding RNAs.
Chen CC; Qian X; Yoon BJ
Bioinformatics; 2019 Apr; 35(7):1133-1141. PubMed ID: 30169792
[TBL] [Abstract][Full Text] [Related]
36. Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots.
Doose G; Metzler D
Bioinformatics; 2012 Sep; 28(17):2242-8. PubMed ID: 22796961
[TBL] [Abstract][Full Text] [Related]
37. Secondary structure-based analysis of mouse brain small RNA sequences obtained by using next-generation sequencing.
Kiyosawa H; Okumura A; Okui S; Ushida C; Kawai G
Genomics; 2015 Aug; 106(2):122-8. PubMed ID: 26003051
[TBL] [Abstract][Full Text] [Related]
38. ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.
Ge P; Zhong C; Zhang S
BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S15. PubMed ID: 25253206
[TBL] [Abstract][Full Text] [Related]
39. Biocomputational prediction of non-coding RNAs in model cyanobacteria.
Voss B; Georg J; Schön V; Ude S; Hess WR
BMC Genomics; 2009 Mar; 10():123. PubMed ID: 19309518
[TBL] [Abstract][Full Text] [Related]
40. Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
Washietl S; Hofacker IL; Lukasser M; Hüttenhofer A; Stadler PF
Nat Biotechnol; 2005 Nov; 23(11):1383-90. PubMed ID: 16273071
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
