These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

289 related articles for article (PubMed ID: 31828235)

  • 1. Alignment-Free Sequence Analysis and Applications.
    Ren J; Bai X; Lu YY; Tang K; Wang Y; Reinert G; Sun F
    Annu Rev Biomed Data Sci; 2018 Jul; 1():93-114. PubMed ID: 31828235
    [TBL] [Abstract][Full Text] [Related]  

  • 2. New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing.
    Song K; Ren J; Reinert G; Deng M; Waterman MS; Sun F
    Brief Bioinform; 2014 May; 15(3):343-53. PubMed ID: 24064230
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Reads Binning Improves Alignment-Free Metagenome Comparison.
    Song K; Ren J; Sun F
    Front Genet; 2019; 10():1156. PubMed ID: 31824565
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reads Binning Improves the Assembly of Viral Genome Sequences From Metagenomic Samples.
    Song K
    Front Microbiol; 2021; 12():664560. PubMed ID: 34093479
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics.
    Ren J; Song K; Deng M; Reinert G; Cannon CH; Sun F
    Bioinformatics; 2016 Apr; 32(7):993-1000. PubMed ID: 26130573
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving contig binning of metagenomic data using [Formula: see text] oligonucleotide frequency dissimilarity.
    Wang Y; Wang K; Lu YY; Sun F
    BMC Bioinformatics; 2017 Sep; 18(1):425. PubMed ID: 28931373
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CAFE: aCcelerated Alignment-FrEe sequence analysis.
    Lu YY; Tang K; Ren J; Fuhrman JA; Waterman MS; Sun F
    Nucleic Acids Res; 2017 Jul; 45(W1):W554-W559. PubMed ID: 28472388
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Alignment-free supervised classification of metagenomes by recursive SVM.
    Cui H; Zhang X
    BMC Genomics; 2013 Sep; 14():641. PubMed ID: 24053649
    [TBL] [Abstract][Full Text] [Related]  

  • 10. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects.
    Wang Y; Hu H; Li X
    OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deduplication Improves Cost-Efficiency and Yields of
    Zhang Z; Zhang L; Zhang G; Zhao Z; Wang H; Ju F
    Microbiol Spectr; 2023 Feb; 11(2):e0428222. PubMed ID: 36744896
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.
    Zhong C; Yang Y; Yooseph S
    BMC Bioinformatics; 2016 Aug; 17 Suppl 8(Suppl 8):283. PubMed ID: 27585568
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes.
    Gkanogiannis A; Gazut S; Salanoubat M; Kanj S; Brüls T
    BMC Bioinformatics; 2016 Aug; 17(1):311. PubMed ID: 27542753
    [TBL] [Abstract][Full Text] [Related]  

  • 14. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning.
    Wang Y; Leung H; Yiu S; Chin F
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S12. PubMed ID: 24564377
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
    Patin NV; Goodwin KD
    mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs.
    Du Y; Sun F
    Bioinformatics; 2022 May; 38(11):2973-2979. PubMed ID: 35482530
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
    White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK
    mSystems; 2016; 1(3):. PubMed ID: 27822530
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns.
    Comin M; Schimd M
    BMC Bioinformatics; 2014; 15 Suppl 9(Suppl 9):S1. PubMed ID: 25252700
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.