137 related articles for article (PubMed ID: 31842734)
1. An efficient exact algorithm for computing all pairwise distances between reconciliations in the duplication-transfer-loss model.
Santichaivekin S; Mawhorter R; Libeskind-Hadas R
BMC Bioinformatics; 2019 Dec; 20(Suppl 20):636. PubMed ID: 31842734
[TBL] [Abstract][Full Text] [Related]
2. Hierarchical clustering of maximum parsimony reconciliations.
Mawhorter R; Libeskind-Hadas R
BMC Bioinformatics; 2019 Nov; 20(1):612. PubMed ID: 31775628
[TBL] [Abstract][Full Text] [Related]
3. Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model.
Grueter M; Duran K; Ramalingam R; Libeskind-Hadas R
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2136-2143. PubMed ID: 31722482
[TBL] [Abstract][Full Text] [Related]
4. Computing the Diameter of the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model.
Haack J; Zupke E; Ramirez A; Wu YC; Libeskind-Hadas R
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):14-22. PubMed ID: 29994484
[TBL] [Abstract][Full Text] [Related]
5. Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.
Bansal MS; Alm EJ; Kellis M
J Comput Biol; 2013 Oct; 20(10):738-54. PubMed ID: 24033262
[TBL] [Abstract][Full Text] [Related]
6. Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence Model.
Du H; Ong YS; Knittel M; Mawhorter R; Liu N; Gross G; Tojo R; Libeskind-Hadas R; Wu YC
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2144-2156. PubMed ID: 31199267
[TBL] [Abstract][Full Text] [Related]
7. Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model.
Mawhorter R; Liu N; Libeskind-Hadas R; Wu YC
BMC Bioinformatics; 2019 Dec; 20(Suppl 20):639. PubMed ID: 31842732
[TBL] [Abstract][Full Text] [Related]
8. An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework.
Doyon JP; Hamel S; Chauve C
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):26-39. PubMed ID: 21464510
[TBL] [Abstract][Full Text] [Related]
9. DTL reconciliation repair.
Ma W; Smirnov D; Libeskind-Hadas R
BMC Bioinformatics; 2017 Mar; 18(Suppl 3):76. PubMed ID: 28361686
[TBL] [Abstract][Full Text] [Related]
10. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
[TBL] [Abstract][Full Text] [Related]
11. Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree.
Wu T; Zhang L
BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S7. PubMed ID: 22151151
[TBL] [Abstract][Full Text] [Related]
12. Exploring the space of gene/species reconciliations with transfers.
Chan YB; Ranwez V; Scornavacca C
J Math Biol; 2015 Nov; 71(5):1179-209. PubMed ID: 25502987
[TBL] [Abstract][Full Text] [Related]
13. DTL-RnB: Algorithms and Tools for Summarizing the Space of DTL Reconciliations.
Ma W; Smirnov D; Forman J; Schweickart A; Slocum C; Srinivasan S; Libeskind-Hadas R
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(2):411-421. PubMed ID: 26955051
[TBL] [Abstract][Full Text] [Related]
14. Maximum parsimony reconciliation in the DTLOR model.
Liu J; Mawhorter R; Liu N; Santichaivekin S; Bush E; Libeskind-Hadas R
BMC Bioinformatics; 2021 Aug; 22(Suppl 10):394. PubMed ID: 34348661
[TBL] [Abstract][Full Text] [Related]
15. Gene tree species tree reconciliation with gene conversion.
Hasić D; Tannier E
J Math Biol; 2019 May; 78(6):1981-2014. PubMed ID: 30767052
[TBL] [Abstract][Full Text] [Related]
16. On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):587-599. PubMed ID: 28055898
[TBL] [Abstract][Full Text] [Related]
17. Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations.
Chan YB; Ranwez V; Scornavacca C
J Theor Biol; 2017 Nov; 432():1-13. PubMed ID: 28801222
[TBL] [Abstract][Full Text] [Related]
18. Pareto-optimal phylogenetic tree reconciliation.
Libeskind-Hadas R; Wu YC; Bansal MS; Kellis M
Bioinformatics; 2014 Jun; 30(12):i87-95. PubMed ID: 24932009
[TBL] [Abstract][Full Text] [Related]
19. Reconciliation with non-binary species trees.
Vernot B; Stolzer M; Goldman A; Durand D
J Comput Biol; 2008 Oct; 15(8):981-1006. PubMed ID: 18808330
[TBL] [Abstract][Full Text] [Related]
20. Representing a set of reconciliations in a compact way.
Scornavacca C; Paprotny W; Berry V; Ranwez V
J Bioinform Comput Biol; 2013 Apr; 11(2):1250025. PubMed ID: 23600816
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]