236 related articles for article (PubMed ID: 31842741)
1. SimSpliceEvol: alternative splicing-aware simulation of biological sequence evolution.
Kuitche E; Jammali S; Ouangraoua A
BMC Bioinformatics; 2019 Dec; 20(Suppl 20):640. PubMed ID: 31842741
[TBL] [Abstract][Full Text] [Related]
2. SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups.
Jammali S; Aguilar JD; Kuitche E; Ouangraoua A
BMC Bioinformatics; 2019 Mar; 20(Suppl 3):133. PubMed ID: 30925859
[TBL] [Abstract][Full Text] [Related]
3. Unusual intron conservation near tissue-regulated exons found by splicing microarrays.
Sugnet CW; Srinivasan K; Clark TA; O'Brien G; Cline MS; Wang H; Williams A; Kulp D; Blume JE; Haussler D; Ares M
PLoS Comput Biol; 2006 Jan; 2(1):e4. PubMed ID: 16424921
[TBL] [Abstract][Full Text] [Related]
4. Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human.
Clark F; Thanaraj TA
Hum Mol Genet; 2002 Feb; 11(4):451-64. PubMed ID: 11854178
[TBL] [Abstract][Full Text] [Related]
5. The 5' leader of plant PgiC has an intron: the leader shows both the loss and maintenance of constraints compared with introns and exons in the coding region.
Gottlieb LD; Ford VS
Mol Biol Evol; 2002 Sep; 19(9):1613-23. PubMed ID: 12200488
[TBL] [Abstract][Full Text] [Related]
6. Splicing of constitutive upstream introns is essential for the recognition of intra-exonic suboptimal splice sites in the thrombopoietin gene.
Romano M; Marcucci R; Baralle FE
Nucleic Acids Res; 2001 Feb; 29(4):886-94. PubMed ID: 11160920
[TBL] [Abstract][Full Text] [Related]
7. Exonization of transposed elements: A challenge and opportunity for evolution.
Schmitz J; Brosius J
Biochimie; 2011 Nov; 93(11):1928-34. PubMed ID: 21787833
[TBL] [Abstract][Full Text] [Related]
8. Differentiated evolutionary rates in alternative exons and the implications for splicing regulation.
Plass M; Eyras E
BMC Evol Biol; 2006 Jun; 6():50. PubMed ID: 16792801
[TBL] [Abstract][Full Text] [Related]
9. Genomic structure and alternative splicing of murine R2B receptor protein tyrosine phosphatases (PTPkappa, mu, rho and PCP-2).
Besco J; Popesco MC; Davuluri RV; Frostholm A; Rotter A
BMC Genomics; 2004 Feb; 5(1):14. PubMed ID: 15040814
[TBL] [Abstract][Full Text] [Related]
10. Alternative splicing of the sheep MITF gene: novel transcripts detectable in skin.
Saravanaperumal SA; Pediconi D; Renieri C; La Terza A
Gene; 2014 Nov; 552(1):165-75. PubMed ID: 25239663
[TBL] [Abstract][Full Text] [Related]
11. In silico analysis of the sequence features responsible for alternatively spliced introns in the model green alga Chlamydomonas reinhardtii.
Raj-Kumar PK; Vallon O; Liang C
Plant Mol Biol; 2017 Jun; 94(3):253-265. PubMed ID: 28364390
[TBL] [Abstract][Full Text] [Related]
12. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
13. ExOrthist: a tool to infer exon orthologies at any evolutionary distance.
Márquez Y; Mantica F; Cozzuto L; Burguera D; Hermoso-Pulido A; Ponomarenko J; Roy SW; Irimia M
Genome Biol; 2021 Aug; 22(1):239. PubMed ID: 34416914
[TBL] [Abstract][Full Text] [Related]
14. Model system for evaluation of alternative splicing: exon skipping.
Yuan ZA; Chen E; Gibson CW
DNA Cell Biol; 2001 Dec; 20(12):807-13. PubMed ID: 11879574
[TBL] [Abstract][Full Text] [Related]
15. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
Li Y; Rao X; Mattox WW; Amos CI; Liu B
PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
[TBL] [Abstract][Full Text] [Related]
16. Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions.
Thanaraj TA; Clark F
Nucleic Acids Res; 2001 Jun; 29(12):2581-93. PubMed ID: 11410667
[TBL] [Abstract][Full Text] [Related]
17. Structural analysis of the human RFC-1 gene encoding a folate transporter reveals multiple promoters and alternatively spliced transcripts with 5' end heterogeneity.
Tolner B; Roy K; Sirotnak FM
Gene; 1998 May; 211(2):331-41. PubMed ID: 9602167
[TBL] [Abstract][Full Text] [Related]
18. Phylogenetic comparison of the pre-mRNA adenosine deaminase ADAR2 genes and transcripts: conservation and diversity in editing site sequence and alternative splicing patterns.
Slavov D; Gardiner K
Gene; 2002 Oct; 299(1-2):83-94. PubMed ID: 12459255
[TBL] [Abstract][Full Text] [Related]
19. Intronization, de-intronization and intron sliding are rare in Cryptococcus.
Roy SW
BMC Evol Biol; 2009 Aug; 9():192. PubMed ID: 19664208
[TBL] [Abstract][Full Text] [Related]
20. Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
Cusack BP; Wolfe KH
Mol Biol Evol; 2005 Nov; 22(11):2198-208. PubMed ID: 16049198
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]