255 related articles for article (PubMed ID: 31842858)
1. Crossing fitness valleys via double substitutions within codons.
Belinky F; Sela I; Rogozin IB; Koonin EV
BMC Biol; 2019 Dec; 17(1):105. PubMed ID: 31842858
[TBL] [Abstract][Full Text] [Related]
2. No evidence for widespread positive selection on double substitutions within codons in primates and yeasts.
Belinky F; Bykova A; Yurchenko V; Rogozin IB
Front Genet; 2022; 13():991249. PubMed ID: 36159983
[TBL] [Abstract][Full Text] [Related]
3. Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events.
Belinky F; Ganguly I; Poliakov E; Yurchenko V; Rogozin IB
Int J Mol Sci; 2021 Feb; 22(4):. PubMed ID: 33672790
[TBL] [Abstract][Full Text] [Related]
4. Evolutionary switches between two serine codon sets are driven by selection.
Rogozin IB; Belinky F; Pavlenko V; Shabalina SA; Kristensen DM; Koonin EV
Proc Natl Acad Sci U S A; 2016 Nov; 113(46):13109-13113. PubMed ID: 27799560
[TBL] [Abstract][Full Text] [Related]
5. The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints?
Comeron JM; Kreitman M
Genetics; 1998 Oct; 150(2):767-75. PubMed ID: 9755207
[TBL] [Abstract][Full Text] [Related]
6. Nonsynonymous, synonymous and nonsense mutations in human cancer-related genes undergo stronger purifying selections than expectation.
Chu D; Wei L
BMC Cancer; 2019 Apr; 19(1):359. PubMed ID: 30991970
[TBL] [Abstract][Full Text] [Related]
7. Purifying and positive selection in the evolution of stop codons.
Belinky F; Babenko VN; Rogozin IB; Koonin EV
Sci Rep; 2018 Jun; 8(1):9260. PubMed ID: 29915293
[TBL] [Abstract][Full Text] [Related]
8. Selection Shapes Synonymous Stop Codon Use in Mammals.
Seoighe C; Kiniry SJ; Peters A; Baranov PV; Yang H
J Mol Evol; 2020 Sep; 88(7):549-561. PubMed ID: 32617614
[TBL] [Abstract][Full Text] [Related]
9. Inferring natural selection operating on conservative and radical substitution at single amino acid sites.
Suzuki Y
Genes Genet Syst; 2007 Aug; 82(4):341-60. PubMed ID: 17895585
[TBL] [Abstract][Full Text] [Related]
10. New methods for detecting positive selection at single amino acid sites.
Suzuki Y
J Mol Evol; 2004 Jul; 59(1):11-9. PubMed ID: 15383903
[TBL] [Abstract][Full Text] [Related]
11. Detecting Adaptation in Protein-Coding Genes Using a Bayesian Site-Heterogeneous Mutation-Selection Codon Substitution Model.
Rodrigue N; Lartillot N
Mol Biol Evol; 2017 Jan; 34(1):204-214. PubMed ID: 27744408
[TBL] [Abstract][Full Text] [Related]
12. The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons.
Błażej P; Mackiewicz D; Wnętrzak M; Mackiewicz P
G3 (Bethesda); 2017 Mar; 7(3):967-981. PubMed ID: 28122952
[TBL] [Abstract][Full Text] [Related]
13. Detecting positive and purifying selection at synonymous sites in yeast and worm.
Zhou T; Gu W; Wilke CO
Mol Biol Evol; 2010 Aug; 27(8):1912-22. PubMed ID: 20231333
[TBL] [Abstract][Full Text] [Related]
14. Weak selection on synonymous codons substantially inflates
Rahman S; Kosakovsky Pond SL; Webb A; Hey J
Proc Natl Acad Sci U S A; 2021 May; 118(20):. PubMed ID: 33972434
[TBL] [Abstract][Full Text] [Related]
15. Positive selection at sites of multiple amino acid replacements since rat-mouse divergence.
Bazykin GA; Kondrashov FA; Ogurtsov AY; Sunyaev S; Kondrashov AS
Nature; 2004 Jun; 429(6991):558-62. PubMed ID: 15175752
[TBL] [Abstract][Full Text] [Related]
16. Codon substitution in evolution and the "saturation" of synonymous changes.
Gojobori T
Genetics; 1983 Dec; 105(4):1011-27. PubMed ID: 6642197
[TBL] [Abstract][Full Text] [Related]
17. Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation.
Aris-Brosou S; Bielawski JP
Gene; 2006 Aug; 378():58-64. PubMed ID: 16797879
[TBL] [Abstract][Full Text] [Related]
18. SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage.
Pouyet F; Bailly-Bechet M; Mouchiroud D; Guéguen L
Genome Biol Evol; 2016 Aug; 8(8):2427-41. PubMed ID: 27401173
[TBL] [Abstract][Full Text] [Related]
19. Selective pressures at a codon-level predict deleterious mutations in human disease genes.
Arbiza L; Duchi S; Montaner D; Burguet J; Pantoja-Uceda D; Pineda-Lucena A; Dopazo J; Dopazo H
J Mol Biol; 2006 May; 358(5):1390-404. PubMed ID: 16584746
[TBL] [Abstract][Full Text] [Related]
20. Overestimation of nonsynonymous/synonymous rate ratio by reverse-translation of aligned amino acid sequences.
Suzuki Y
Genes Genet Syst; 2011; 86(2):123-9. PubMed ID: 21670552
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]