256 related articles for article (PubMed ID: 31842858)
21. Nucleic acid composition, codon usage, and the rate of synonymous substitution in protein-coding genes.
Ticher A; Graur D
J Mol Evol; 1989 Apr; 28(4):286-98. PubMed ID: 2499685
[TBL] [Abstract][Full Text] [Related]
22. Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.
Ngandu NK; Scheffler K; Moore P; Woodman Z; Martin D; Seoighe C
Virol J; 2008 Dec; 5():160. PubMed ID: 19105834
[TBL] [Abstract][Full Text] [Related]
23. Genetic robustness and selection at the protein level for synonymous codons.
Archetti M
J Evol Biol; 2006 Mar; 19(2):353-65. PubMed ID: 16599911
[TBL] [Abstract][Full Text] [Related]
24. Selection on start codons in prokaryotes and potential compensatory nucleotide substitutions.
Belinky F; Rogozin IB; Koonin EV
Sci Rep; 2017 Sep; 7(1):12422. PubMed ID: 28963504
[TBL] [Abstract][Full Text] [Related]
25. Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes.
Hughes AL; Friedman R
Immunogenetics; 2008 Sep; 60(9):495-506. PubMed ID: 18581108
[TBL] [Abstract][Full Text] [Related]
26. Genome-wide patterns of nucleotide substitution reveal stringent functional constraints on the protein sequences of thermophiles.
Friedman R; Drake JW; Hughes AL
Genetics; 2004 Jul; 167(3):1507-12. PubMed ID: 15280258
[TBL] [Abstract][Full Text] [Related]
27. Natural selection pressure exerted on "Silent" mutations during the evolution of SARS-CoV-2: Evidence from codon usage and RNA structure.
Bai H; Ata G; Sun Q; Rahman SU; Tao S
Virus Res; 2023 Jan; 323():198966. PubMed ID: 36244617
[TBL] [Abstract][Full Text] [Related]
28. Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates.
Dunn KA; Kenney T; Gu H; Bielawski JP
BMC Evol Biol; 2019 Jan; 19(1):22. PubMed ID: 30642241
[TBL] [Abstract][Full Text] [Related]
29. Evolution of the genetic code through progressive symmetry breaking.
Lenstra R
J Theor Biol; 2014 Apr; 347():95-108. PubMed ID: 24434741
[TBL] [Abstract][Full Text] [Related]
30. DNA sequence evolution: the sounds of silence.
Sharp PM; Averof M; Lloyd AT; Matassi G; Peden JF
Philos Trans R Soc Lond B Biol Sci; 1995 Sep; 349(1329):241-7. PubMed ID: 8577834
[TBL] [Abstract][Full Text] [Related]
31. Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons.
Aziz R; Sen P; Beura PK; Das S; Tula D; Dash M; Namsa ND; Deka RC; Feil EJ; Satapathy SS; Ray SK
DNA Res; 2022 Jun; 29(4):. PubMed ID: 35920776
[TBL] [Abstract][Full Text] [Related]
32. Empirical codon substitution matrix.
Schneider A; Cannarozzi GM; Gonnet GH
BMC Bioinformatics; 2005 Jun; 6():134. PubMed ID: 15927081
[TBL] [Abstract][Full Text] [Related]
33. Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites.
Bazykin GA; Dushoff J; Levin SA; Kondrashov AS
Proc Natl Acad Sci U S A; 2006 Dec; 103(51):19396-401. PubMed ID: 17164328
[TBL] [Abstract][Full Text] [Related]
34. The Selective Advantage of Synonymous Codon Usage Bias in Salmonella.
Brandis G; Hughes D
PLoS Genet; 2016 Mar; 12(3):e1005926. PubMed ID: 26963725
[TBL] [Abstract][Full Text] [Related]
35. A simple method for estimating the intensity of purifying selection in protein-coding genes.
Ophir R; Itoh T; Graur D; Gojobori T
Mol Biol Evol; 1999 Jan; 16(1):49-53. PubMed ID: 10331251
[TBL] [Abstract][Full Text] [Related]
36. The fitness effects of synonymous mutations in DNA and RNA viruses.
Cuevas JM; Domingo-Calap P; Sanjuán R
Mol Biol Evol; 2012 Jan; 29(1):17-20. PubMed ID: 21771719
[TBL] [Abstract][Full Text] [Related]
37. Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations.
Matsumoto T; John A; Baeza-Centurion P; Li B; Akashi H
Mol Biol Evol; 2016 Jun; 33(6):1580-9. PubMed ID: 26873577
[TBL] [Abstract][Full Text] [Related]
38. Evolution under strong balancing selection: how many codons determine specificity at the female self-incompatibility gene SRK in Brassicaceae?
Castric V; Vekemans X
BMC Evol Biol; 2007 Aug; 7():132. PubMed ID: 17683611
[TBL] [Abstract][Full Text] [Related]
39. Serine substitutions are linked to codon usage and differ for variable and conserved protein regions.
Schwartz GW; Shauli T; Linial M; Hershberg U
Sci Rep; 2019 Nov; 9(1):17238. PubMed ID: 31754132
[TBL] [Abstract][Full Text] [Related]
40. Advantages of a mechanistic codon substitution model for evolutionary analysis of protein-coding sequences.
Miyazawa S
PLoS One; 2011; 6(12):e28892. PubMed ID: 22220197
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]