These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

98 related articles for article (PubMed ID: 31845383)

  • 1. SPOT-Fold: Fragment-Free Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map.
    Cai Y; Li X; Sun Z; Lu Y; Zhao H; Hanson J; Paliwal K; Litfin T; Zhou Y; Yang Y
    J Comput Chem; 2020 Mar; 41(8):745-750. PubMed ID: 31845383
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
    Roche R; Bhattacharya S; Bhattacharya D
    PLoS Comput Biol; 2021 Feb; 17(2):e1008753. PubMed ID: 33621244
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
    Wang S; Sun S; Li Z; Zhang R; Xu J
    PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions.
    Mortuza SM; Zheng W; Zhang C; Li Y; Pearce R; Zhang Y
    Nat Commun; 2021 Aug; 12(1):5011. PubMed ID: 34408149
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Contact-assisted protein structure modeling by global optimization in CASP11.
    Joo K; Joung I; Cheng Q; Lee SJ; Lee J
    Proteins; 2016 Sep; 84 Suppl 1():189-99. PubMed ID: 26677100
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
    Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Deep-learning contact-map guided protein structure prediction in CASP13.
    Zheng W; Li Y; Zhang C; Pearce R; Mortuza SM; Zhang Y
    Proteins; 2019 Dec; 87(12):1149-1164. PubMed ID: 31365149
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein oligomer modeling guided by predicted interchain contacts in CASP14.
    Baek M; Anishchenko I; Park H; Humphreys IR; Baker D
    Proteins; 2021 Dec; 89(12):1824-1833. PubMed ID: 34324224
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Template-free modeling by LEE and LEER in CASP11.
    Joung I; Lee SY; Cheng Q; Kim JY; Joo K; Lee SJ; Lee J
    Proteins; 2016 Sep; 84 Suppl 1():118-30. PubMed ID: 26474186
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.
    Liu Y; Beveridge DL
    Proteins; 2002 Jan; 46(1):128-46. PubMed ID: 11746709
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Integration of QUARK and I-TASSER for Ab Initio Protein Structure Prediction in CASP11.
    Zhang W; Yang J; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):76-86. PubMed ID: 26370505
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis of free modeling predictions by RBO aleph in CASP11.
    Mabrouk M; Werner T; Schneider M; Putz I; Brock O
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):87-104. PubMed ID: 26492194
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Does inclusion of residue-residue contact information boost protein threading?
    Bhattacharya S; Bhattacharya D
    Proteins; 2019 Jul; 87(7):596-606. PubMed ID: 30882932
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.
    Gao Y; Wang S; Deng M; Xu J
    BMC Bioinformatics; 2018 May; 19(Suppl 4):100. PubMed ID: 29745828
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction.
    Faraggi E; Yang Y; Zhang S; Zhou Y
    Structure; 2009 Nov; 17(11):1515-27. PubMed ID: 19913486
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Recent Progress of Protein Tertiary Structure Prediction.
    Wuyun Q; Chen Y; Shen Y; Cao Y; Hu G; Cui W; Gao J; Zheng W
    Molecules; 2024 Feb; 29(4):. PubMed ID: 38398585
    [TBL] [Abstract][Full Text] [Related]  

  • 19. TOUCHSTONE II: a new approach to ab initio protein structure prediction.
    Zhang Y; Kolinski A; Skolnick J
    Biophys J; 2003 Aug; 85(2):1145-64. PubMed ID: 12885659
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An Improved Integration of Template-Based and Template-Free Protein Structure Modeling Methods and its Assessment in CASP11.
    Li J; Adhikari B; Cheng J
    Protein Pept Lett; 2015; 22(7):586-93. PubMed ID: 25990081
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.