255 related articles for article (PubMed ID: 31855461)
1. Exploring a
Mahmud AKMF; Yang D; Stenberg P; Ioshikhes I; Nandi S
J Comput Biol; 2020 Aug; 27(8):1313-1328. PubMed ID: 31855461
[No Abstract] [Full Text] [Related]
2. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
3. Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs.
Starr MO; Ho MC; Gunther EJ; Tu YK; Shur AS; Goetz SE; Borok MJ; Kang V; Drewell RA
Dev Biol; 2011 Nov; 359(2):290-302. PubMed ID: 21821017
[TBL] [Abstract][Full Text] [Related]
4. Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks.
Pettie KP; Dresch JM; Drewell RA
Mech Dev; 2016 Aug; 141():51-61. PubMed ID: 27264535
[TBL] [Abstract][Full Text] [Related]
5. A Hox Transcription Factor Collective Binds a Highly Conserved Distal-less cis-Regulatory Module to Generate Robust Transcriptional Outcomes.
Uhl JD; Zandvakili A; Gebelein B
PLoS Genet; 2016 Apr; 12(4):e1005981. PubMed ID: 27058369
[TBL] [Abstract][Full Text] [Related]
6. The cis-regulatory logic underlying abdominal Hox-mediated repression versus activation of regulatory elements in Drosophila.
Zandvakili A; Uhl JD; Campbell I; Salomone J; Song YC; Gebelein B
Dev Biol; 2019 Jan; 445(2):226-236. PubMed ID: 30468713
[TBL] [Abstract][Full Text] [Related]
7. COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N; Polychronidou M; Lohmann I
PLoS One; 2012; 7(12):e52055. PubMed ID: 23272209
[TBL] [Abstract][Full Text] [Related]
8. Identification of cis-regulatory modules encoding temporal dynamics during development.
Potier D; Seyres D; Guichard C; Iche-Torres M; Aerts S; Herrmann C; Perrin L
BMC Genomics; 2014 Jun; 15(1):534. PubMed ID: 24972496
[TBL] [Abstract][Full Text] [Related]
9. Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.
Girgis HZ; Ovcharenko I
BMC Bioinformatics; 2012 Feb; 13():25. PubMed ID: 22313678
[TBL] [Abstract][Full Text] [Related]
10. The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages.
Repele A; Krueger S; Bhattacharyya T; Tuineau MY; Manu
PLoS One; 2019; 14(6):e0217580. PubMed ID: 31181110
[TBL] [Abstract][Full Text] [Related]
11. Synthetic and genomic regulatory elements reveal aspects of
King DM; Hong CKY; Shepherdson JL; Granas DM; Maricque BB; Cohen BA
Elife; 2020 Feb; 9():. PubMed ID: 32043966
[TBL] [Abstract][Full Text] [Related]
12. cisMEP: an integrated repository of genomic epigenetic profiles and cis-regulatory modules in Drosophila.
Yang TH; Wang CC; Hung PC; Wu WS
BMC Syst Biol; 2014; 8 Suppl 4(Suppl 4):S8. PubMed ID: 25521507
[TBL] [Abstract][Full Text] [Related]
13. Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.
Yáñez-Cuna JO; Dinh HQ; Kvon EZ; Shlyueva D; Stark A
Genome Res; 2012 Oct; 22(10):2018-30. PubMed ID: 22534400
[TBL] [Abstract][Full Text] [Related]
14. Flanking sequence context-dependent transcription factor binding in early Drosophila development.
Stringham JL; Brown AS; Drewell RA; Dresch JM
BMC Bioinformatics; 2013 Oct; 14():298. PubMed ID: 24093548
[TBL] [Abstract][Full Text] [Related]
15. CisMiner: genome-wide in-silico cis-regulatory module prediction by fuzzy itemset mining.
Navarro C; Lopez FJ; Cano C; Garcia-Alcalde F; Blanco A
PLoS One; 2014; 9(9):e108065. PubMed ID: 25268582
[TBL] [Abstract][Full Text] [Related]
16. Common binding by redundant group B Sox proteins is evolutionarily conserved in Drosophila.
Carl SH; Russell S
BMC Genomics; 2015 Apr; 16(1):292. PubMed ID: 25887553
[TBL] [Abstract][Full Text] [Related]
17. Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors.
Yu X; Lin J; Zack DJ; Qian J
BMC Bioinformatics; 2007 Nov; 8():437. PubMed ID: 17996093
[TBL] [Abstract][Full Text] [Related]
18. Single-minded, Dmef2, Pointed, and Su(H) act on identified regulatory sequences of the roughest gene in Drosophila melanogaster.
Apitz H; Strünkelnberg M; de Couet HG; Fischbach KF
Dev Genes Evol; 2005 Sep; 215(9):460-69. PubMed ID: 16096801
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny.
Rouault H; Mazouni K; Couturier L; Hakim V; Schweisguth F
Proc Natl Acad Sci U S A; 2010 Aug; 107(33):14615-20. PubMed ID: 20671200
[TBL] [Abstract][Full Text] [Related]
20. Identifying transcriptional cis-regulatory modules in animal genomes.
Suryamohan K; Halfon MS
Wiley Interdiscip Rev Dev Biol; 2015; 4(2):59-84. PubMed ID: 25704908
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
