These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

194 related articles for article (PubMed ID: 31861980)

  • 1. BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.
    Gadepalli VS; Ozer HG; Yilmaz AS; Pietrzak M; Webb A
    BMC Bioinformatics; 2019 Dec; 20(Suppl 24):670. PubMed ID: 31861980
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The START App: a web-based RNAseq analysis and visualization resource.
    Nelson JW; Sklenar J; Barnes AP; Minnier J
    Bioinformatics; 2017 Feb; 33(3):447-449. PubMed ID: 28171615
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
    Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
    BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
    Cornwell M; Vangala M; Taing L; Herbert Z; Köster J; Li B; Sun H; Li T; Zhang J; Qiu X; Pun M; Jeselsohn R; Brown M; Liu XS; Long HW
    BMC Bioinformatics; 2018 Apr; 19(1):135. PubMed ID: 29649993
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Shiny-Seq: advanced guided transcriptome analysis.
    Sundararajan Z; Knoll R; Hombach P; Becker M; Schultze JL; Ulas T
    BMC Res Notes; 2019 Jul; 12(1):432. PubMed ID: 31319888
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High Throughput Sequencing-Based Approaches for Gene Expression Analysis.
    Reddy RRS; Ramanujam MV
    Methods Mol Biol; 2018; 1783():299-323. PubMed ID: 29767369
    [TBL] [Abstract][Full Text] [Related]  

  • 8. QuickRNASeq: Guide for Pipeline Implementation and for Interactive Results Visualization.
    He W; Zhao S; Zhang C; Vincent MS; Zhang B
    Methods Mol Biol; 2018; 1751():57-70. PubMed ID: 29508289
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A Bioinformatics Pipeline for the Identification of CHO Cell Differential Gene Expression from RNA-Seq Data.
    Monger C; Motheramgari K; McSharry J; Barron N; Clarke C
    Methods Mol Biol; 2017; 1603():169-186. PubMed ID: 28493130
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Streamlined Low-Input Transcriptomics through EASY-RNAseq.
    Zhou Y; Xu H; Wu H; Yu H; Zhou P; Qiu X; Zheng Z; Chen Q; Xu F; Li G; Zhou J; Cheng G; He W; Zou L; Wan Y
    J Mol Biol; 2019 Dec; 431(24):5075-5085. PubMed ID: 31491452
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
    Kong GL; Nguyen TT; Rosales WK; Panikar AD; Cheney JHW; Lusardi TA; Yashar WM; Curtiss BM; Carratt SA; Braun TP; Maxson JE
    BMC Bioinformatics; 2024 Apr; 25(1):142. PubMed ID: 38566005
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Holistic optimization of an RNA-seq workflow for multi-threaded environments.
    Hung LH; Lloyd W; Agumbe Sridhar R; Athmalingam Ravishankar SD; Xiong Y; Sobie E; Yeung KY
    Bioinformatics; 2019 Oct; 35(20):4173-4175. PubMed ID: 30859176
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Guide for Designing and Analyzing RNA-Seq Data.
    Chatterjee A; Ahn A; Rodger EJ; Stockwell PA; Eccles MR
    Methods Mol Biol; 2018; 1783():35-80. PubMed ID: 29767357
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.
    Kalari KR; Nair AA; Bhavsar JD; O'Brien DR; Davila JI; Bockol MA; Nie J; Tang X; Baheti S; Doughty JB; Middha S; Sicotte H; Thompson AE; Asmann YW; Kocher JP
    BMC Bioinformatics; 2014 Jun; 15():224. PubMed ID: 24972667
    [TBL] [Abstract][Full Text] [Related]  

  • 15. OneStopRNAseq: A Web Application for Comprehensive and Efficient Analyses of RNA-Seq Data.
    Li R; Hu K; Liu H; Green MR; Zhu LJ
    Genes (Basel); 2020 Oct; 11(10):. PubMed ID: 33023248
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RseqFlow: workflows for RNA-Seq data analysis.
    Wang Y; Mehta G; Mayani R; Lu J; Souaiaia T; Chen Y; Clark A; Yoon HJ; Wan L; Evgrafov OV; Knowles JA; Deelman E; Chen T
    Bioinformatics; 2011 Sep; 27(18):2598-600. PubMed ID: 21795323
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Conduct and Quality Control of Differential Gene Expression Analysis Using High-Throughput Transcriptome Sequencing (RNASeq).
    Grassmann F
    Methods Mol Biol; 2019; 1834():29-43. PubMed ID: 30324434
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
    Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
    Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
    [TBL] [Abstract][Full Text] [Related]  

  • 19. UTAP: User-friendly Transcriptome Analysis Pipeline.
    Kohen R; Barlev J; Hornung G; Stelzer G; Feldmesser E; Kogan K; Safran M; Leshkowitz D
    BMC Bioinformatics; 2019 Mar; 20(1):154. PubMed ID: 30909881
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Bio-Docklets: virtualization containers for single-step execution of NGS pipelines.
    Kim B; Ali T; Lijeron C; Afgan E; Krampis K
    Gigascience; 2017 Aug; 6(8):1-7. PubMed ID: 28854616
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.