248 related articles for article (PubMed ID: 31861999)
21. Positional effects revealed in Illumina methylation array and the impact on analysis.
Jiao C; Zhang C; Dai R; Xia Y; Wang K; Giase G; Chen C; Liu C
Epigenomics; 2018 May; 10(5):643-659. PubMed ID: 29469594
[TBL] [Abstract][Full Text] [Related]
22. A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip.
Wang Z; Wu X; Wang Y
BMC Bioinformatics; 2018 Apr; 19(Suppl 5):115. PubMed ID: 29671397
[TBL] [Abstract][Full Text] [Related]
23. Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses.
Heiss JA; Just AC
Clin Epigenetics; 2019 Jan; 11(1):15. PubMed ID: 30678737
[TBL] [Abstract][Full Text] [Related]
24. A data-driven approach to preprocessing Illumina 450K methylation array data.
Pidsley R; Y Wong CC; Volta M; Lunnon K; Mill J; Schalkwyk LC
BMC Genomics; 2013 May; 14():293. PubMed ID: 23631413
[TBL] [Abstract][Full Text] [Related]
25. MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data.
Kilaru V; Barfield RT; Schroeder JW; Smith AK; Conneely KN
Epigenetics; 2012 Mar; 7(3):225-9. PubMed ID: 22430798
[TBL] [Abstract][Full Text] [Related]
26. Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array.
Naeem H; Wong NC; Chatterton Z; Hong MK; Pedersen JS; Corcoran NM; Hovens CM; Macintyre G
BMC Genomics; 2014 Jan; 15(1):51. PubMed ID: 24447442
[TBL] [Abstract][Full Text] [Related]
27. Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells.
Shu C; Zhang X; Aouizerat BE; Xu K
Epigenetics Chromatin; 2020 Nov; 13(1):51. PubMed ID: 33228774
[TBL] [Abstract][Full Text] [Related]
28. Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis.
Sun Z; Cunningham J; Slager S; Kocher JP
Epigenomics; 2015 Aug; 7(5):813-28. PubMed ID: 26366945
[TBL] [Abstract][Full Text] [Related]
29. Efficient detection of differentially methylated regions using DiMmeR.
Almeida D; Skov I; Silva A; Vandin F; Tan Q; Röttger R; Baumbach J
Bioinformatics; 2017 Feb; 33(4):549-551. PubMed ID: 27794558
[TBL] [Abstract][Full Text] [Related]
30. Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.
Touleimat N; Tost J
Epigenomics; 2012 Jun; 4(3):325-41. PubMed ID: 22690668
[TBL] [Abstract][Full Text] [Related]
31. Epigenome-wide DNA methylation assay reveals placental epigenetic markers for noninvasive fetal single-nucleotide polymorphism genotyping in maternal plasma.
Ou X; Wang H; Qu D; Chen Y; Gao J; Sun H
Transfusion; 2014 Oct; 54(10):2523-33. PubMed ID: 24749853
[TBL] [Abstract][Full Text] [Related]
32. Methods for CpG Methylation Array Profiling Via Bisulfite Conversion.
Leti F; Llaci L; Malenica I; DiStefano JK
Methods Mol Biol; 2018; 1706():233-254. PubMed ID: 29423802
[TBL] [Abstract][Full Text] [Related]
33. Comparison of Illumina 450K and EPIC arrays in placental DNA methylation.
Fernandez-Jimenez N; Allard C; Bouchard L; Perron P; Bustamante M; Bilbao JR; Hivert MF
Epigenetics; 2019 Dec; 14(12):1177-1182. PubMed ID: 31250700
[TBL] [Abstract][Full Text] [Related]
34. Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences.
Moran S; Arribas C; Esteller M
Epigenomics; 2016 Mar; 8(3):389-99. PubMed ID: 26673039
[TBL] [Abstract][Full Text] [Related]
35. Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.
Bizet M; Defrance M; Calonne E; Bontempi G; Sotiriou C; Fuks F; Jeschke J
Epigenetics; 2022 Dec; 17(13):2434-2454. PubMed ID: 36354000
[TBL] [Abstract][Full Text] [Related]
36. Polymorphisms involving gain or loss of CpG sites are significantly enriched in trait-associated SNPs.
Zhou D; Li Z; Yu D; Wan L; Zhu Y; Lai M; Zhang D
Oncotarget; 2015 Nov; 6(37):39995-40004. PubMed ID: 26503467
[TBL] [Abstract][Full Text] [Related]
37. Dynamic variable selection in SNP genotype autocalling from APEX microarray data.
Podder M; Welch WJ; Zamar RH; Tebbutt SJ
BMC Bioinformatics; 2006 Nov; 7():521. PubMed ID: 17137502
[TBL] [Abstract][Full Text] [Related]
38. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
[TBL] [Abstract][Full Text] [Related]
39. Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC v1.0 BeadChip microarrays.
Zhang W; Young JI; Gomez L; Schmidt MA; Lukacsovich D; Varma A; Chen XS; Kunkle B; Martin ER; Wang L
Epigenetics; 2024 Dec; 19(1):2333660. PubMed ID: 38564759
[TBL] [Abstract][Full Text] [Related]
40. TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing.
Farris MH; Scott AR; Texter PA; Bartlett M; Coleman P; Masters D
BMC Bioinformatics; 2018 Apr; 19(1):126. PubMed ID: 29642839
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]