164 related articles for article (PubMed ID: 31874601)
1. CSA: a web service for the complete process of ChIP-Seq analysis.
Li M; Tang L; Wu FX; Pan Y; Wang J
BMC Bioinformatics; 2019 Dec; 20(Suppl 15):515. PubMed ID: 31874601
[TBL] [Abstract][Full Text] [Related]
2. CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction.
Guzman C; D'Orso I
BMC Bioinformatics; 2017 Aug; 18(1):363. PubMed ID: 28789639
[TBL] [Abstract][Full Text] [Related]
3. ChIPseek, a web-based analysis tool for ChIP data.
Chen TW; Li HP; Lee CC; Gan RC; Huang PJ; Wu TH; Lee CY; Chang YF; Tang P
BMC Genomics; 2014 Jun; 15(1):539. PubMed ID: 24974934
[TBL] [Abstract][Full Text] [Related]
4. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
[TBL] [Abstract][Full Text] [Related]
5. The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.
Ambrosini G; Dreos R; Kumar S; Bucher P
BMC Genomics; 2016 Nov; 17(1):938. PubMed ID: 27863463
[TBL] [Abstract][Full Text] [Related]
6. jChIP: a graphical environment for exploratory ChIP-Seq data analysis.
Chojnowski K; Goryca K; Rubel T; Mikula M
BMC Res Notes; 2014 Sep; 7():676. PubMed ID: 25260876
[TBL] [Abstract][Full Text] [Related]
7. An integrated ChIP-seq analysis platform with customizable workflows.
Giannopoulou EG; Elemento O
BMC Bioinformatics; 2011 Jul; 12():277. PubMed ID: 21736739
[TBL] [Abstract][Full Text] [Related]
8. W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data.
Lan X; Bonneville R; Apostolos J; Wu W; Jin VX
Bioinformatics; 2011 Feb; 27(3):428-30. PubMed ID: 21138948
[TBL] [Abstract][Full Text] [Related]
9. A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.
Tran NT; Huang CH
Biol Direct; 2014 Feb; 9():4. PubMed ID: 24555784
[TBL] [Abstract][Full Text] [Related]
10. Nebula--a web-server for advanced ChIP-seq data analysis.
Boeva V; Lermine A; Barette C; Guillouf C; Barillot E
Bioinformatics; 2012 Oct; 28(19):2517-9. PubMed ID: 22829625
[TBL] [Abstract][Full Text] [Related]
11. ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
Qin Q; Mei S; Wu Q; Sun H; Li L; Taing L; Chen S; Li F; Liu T; Zang C; Xu H; Chen Y; Meyer CA; Zhang Y; Brown M; Long HW; Liu XS
BMC Bioinformatics; 2016 Oct; 17(1):404. PubMed ID: 27716038
[TBL] [Abstract][Full Text] [Related]
12. Statistical Analysis and Quality Assessment of ChIP-seq Data with DROMPA.
Nakato R; Shirahige K
Methods Mol Biol; 2018; 1672():631-643. PubMed ID: 29043652
[TBL] [Abstract][Full Text] [Related]
13. iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data.
Yang CC; Andrews EH; Chen MH; Wang WY; Chen JJ; Gerstein M; Liu CC; Cheng C
BMC Genomics; 2016 Aug; 17(1):632. PubMed ID: 27519564
[TBL] [Abstract][Full Text] [Related]
14. MEME-ChIP: motif analysis of large DNA datasets.
Machanick P; Bailey TL
Bioinformatics; 2011 Jun; 27(12):1696-7. PubMed ID: 21486936
[TBL] [Abstract][Full Text] [Related]
15. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
16. CASSys: an integrated software-system for the interactive analysis of ChIP-seq data.
Alawi M; Kurtz S; Beckstette M
J Integr Bioinform; 2011 Jun; 8(2):155. PubMed ID: 21690655
[TBL] [Abstract][Full Text] [Related]
17. Practical guidelines for the comprehensive analysis of ChIP-seq data.
Bailey T; Krajewski P; Ladunga I; Lefebvre C; Li Q; Liu T; Madrigal P; Taslim C; Zhang J
PLoS Comput Biol; 2013; 9(11):e1003326. PubMed ID: 24244136
[TBL] [Abstract][Full Text] [Related]
18. Reusable, extensible, and modifiable R scripts and Kepler workflows for comprehensive single set ChIP-seq analysis.
Cormier N; Kolisnik T; Bieda M
BMC Bioinformatics; 2016 Jul; 17(1):270. PubMed ID: 27377783
[TBL] [Abstract][Full Text] [Related]
19. annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.
Tang X; Srivastava A; Liu H; Machiraju R; Huang K; Leone G
Bioinformatics; 2017 May; 33(10):1570-1571. PubMed ID: 28169395
[TBL] [Abstract][Full Text] [Related]
20. WACS: improving ChIP-seq peak calling by optimally weighting controls.
Awdeh A; Turcotte M; Perkins TJ
BMC Bioinformatics; 2021 Feb; 22(1):69. PubMed ID: 33588754
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]