164 related articles for article (PubMed ID: 31881969)
1. An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots.
Kai Z; Yuting W; Yulin L; Jun L; Juanjuan H
BMC Genomics; 2019 Dec; 20(Suppl 13):979. PubMed ID: 31881969
[TBL] [Abstract][Full Text] [Related]
2. Novel and efficient RNA secondary structure prediction using hierarchical folding.
Jabbari H; Condon A; Zhao S
J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
[TBL] [Abstract][Full Text] [Related]
3. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
Al-Khatib RM; Rashid NA; Abdullah R
J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
[TBL] [Abstract][Full Text] [Related]
4. High sensitivity RNA pseudoknot prediction.
Huang X; Ali H
Nucleic Acids Res; 2007; 35(2):656-63. PubMed ID: 17179177
[TBL] [Abstract][Full Text] [Related]
5. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
6. RNA Secondary Structure Prediction with Pseudoknots Using Chemical Reaction Optimization Algorithm.
Islam MR; Islam MS; Sakeef N
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(3):1195-1207. PubMed ID: 31443047
[TBL] [Abstract][Full Text] [Related]
7. Prediction of consensus RNA secondary structures including pseudoknots.
Witwer C; Hofacker IL; Stadler PF
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
[TBL] [Abstract][Full Text] [Related]
8. KnotSeeker: heuristic pseudoknot detection in long RNA sequences.
Sperschneider J; Datta A
RNA; 2008 Apr; 14(4):630-40. PubMed ID: 18314500
[TBL] [Abstract][Full Text] [Related]
9. HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.
Ren J; Rastegari B; Condon A; Hoos HH
RNA; 2005 Oct; 11(10):1494-504. PubMed ID: 16199760
[TBL] [Abstract][Full Text] [Related]
10. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
11. [An iterative method for prediction of RNA secondary structures including pseudoknots based on minimum of free energy and covariance].
Wang ZX; Luo ZG; Guan NY; Yan FM; Jin X; Zhang W
Yi Chuan; 2007 Jul; 29(7):889-97. PubMed ID: 17646157
[TBL] [Abstract][Full Text] [Related]
12. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
Sperschneider J; Datta A; Wise MJ
RNA; 2011 Jan; 17(1):27-38. PubMed ID: 21098139
[TBL] [Abstract][Full Text] [Related]
13. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
14. RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method.
El Fatmi A; Bekri MA; Benhlima S
J Bioinform Comput Biol; 2019 Oct; 17(5):1950031. PubMed ID: 31856666
[TBL] [Abstract][Full Text] [Related]
15. Accurate prediction of RNA secondary structure including pseudoknots through solving minimum-cost flow with learned potentials.
Gong T; Ju F; Bu D
Commun Biol; 2024 Mar; 7(1):297. PubMed ID: 38461362
[TBL] [Abstract][Full Text] [Related]
16. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
Harmanci AO; Sharma G; Mathews DH
BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
[TBL] [Abstract][Full Text] [Related]
17. Ensemble-based prediction of RNA secondary structures.
Aghaeepour N; Hoos HH
BMC Bioinformatics; 2013 Apr; 14():139. PubMed ID: 23617269
[TBL] [Abstract][Full Text] [Related]
18. Secondary structure prediction of interacting RNA molecules.
Andronescu M; Zhang ZC; Condon A
J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
[TBL] [Abstract][Full Text] [Related]
19. SARNA-Predict: accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
Tsang HH; Wiese KC
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):727-40. PubMed ID: 21030739
[TBL] [Abstract][Full Text] [Related]
20. ATTfold: RNA Secondary Structure Prediction With Pseudoknots Based on Attention Mechanism.
Wang Y; Liu Y; Wang S; Liu Z; Gao Y; Zhang H; Dong L
Front Genet; 2020; 11():612086. PubMed ID: 33384721
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]