BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 31881969)

  • 41. PseudoViewer: automatic visualization of RNA pseudoknots.
    Han K; Lee Y; Kim W
    Bioinformatics; 2002; 18 Suppl 1():S321-8. PubMed ID: 12169562
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Fluorescence competition assay measurements of free energy changes for RNA pseudoknots.
    Liu B; Shankar N; Turner DH
    Biochemistry; 2010 Jan; 49(3):623-34. PubMed ID: 19921809
    [TBL] [Abstract][Full Text] [Related]  

  • 43. An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type.
    Byun Y; Han K
    J Bioinform Comput Biol; 2016 Jun; 14(3):1650009. PubMed ID: 26932273
    [TBL] [Abstract][Full Text] [Related]  

  • 44. An algorithm for the energy barrier problem without pseudoknots and temporary arcs.
    Thachuk C; Manuch J; Rafiey A; Mathieson LA; Stacho L; Condon A
    Pac Symp Biocomput; 2010; ():108-19. PubMed ID: 19908363
    [TBL] [Abstract][Full Text] [Related]  

  • 45. DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
    Sperschneider J; Datta A
    Nucleic Acids Res; 2010 Apr; 38(7):e103. PubMed ID: 20123730
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.
    Montaseri S; Ganjtabesh M; Zare-Mirakabad F
    PLoS One; 2016; 11(11):e0166965. PubMed ID: 27893832
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots.
    Hajdin CE; Bellaousov S; Huggins W; Leonard CW; Mathews DH; Weeks KM
    Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5498-503. PubMed ID: 23503844
    [TBL] [Abstract][Full Text] [Related]  

  • 48. K-partite RNA secondary structures.
    Jiang M; Tejada PJ; Lasisi RO; Cheng S; Fechser DS
    J Comput Biol; 2010 Jul; 17(7):915-25. PubMed ID: 20632871
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
    Waldispühl J; Clote P
    J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
    [TBL] [Abstract][Full Text] [Related]  

  • 50. RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.
    Jabbari H; Wark I; Montemagno C
    PLoS One; 2018; 13(4):e0194583. PubMed ID: 29621250
    [TBL] [Abstract][Full Text] [Related]  

  • 51. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
    Rivas E; Eddy SR
    J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Lifting prediction to alignment of RNA pseudoknots.
    Möhl M; Will S; Backofen R
    J Comput Biol; 2010 Mar; 17(3):429-42. PubMed ID: 20377455
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Topology and prediction of RNA pseudoknots.
    Reidys CM; Huang FW; Andersen JE; Penner RC; Stadler PF; Nebel ME
    Bioinformatics; 2011 Apr; 27(8):1076-85. PubMed ID: 21335320
    [TBL] [Abstract][Full Text] [Related]  

  • 54. The RNA Newton polytope and learnability of energy parameters.
    Forouzmand E; Chitsaz H
    Bioinformatics; 2013 Jul; 29(13):i300-7. PubMed ID: 23812998
    [TBL] [Abstract][Full Text] [Related]  

  • 55. A partition function algorithm for nucleic acid secondary structure including pseudoknots.
    Dirks RM; Pierce NA
    J Comput Chem; 2003 Oct; 24(13):1664-77. PubMed ID: 12926009
    [TBL] [Abstract][Full Text] [Related]  

  • 56. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
    Jabbari H; Condon A
    BMC Bioinformatics; 2014 May; 15():147. PubMed ID: 24884954
    [TBL] [Abstract][Full Text] [Related]  

  • 57. RNA Secondary Structures with Limited Base Pair Span: Exact Backtracking and an Application.
    Lorenz R; Stadler PF
    Genes (Basel); 2020 Dec; 12(1):. PubMed ID: 33374382
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Thermodynamics of RNA structures by Wang-Landau sampling.
    Lou F; Clote P
    Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Improved free energy parameters for RNA pseudoknotted secondary structure prediction.
    Andronescu MS; Pop C; Condon AE
    RNA; 2010 Jan; 16(1):26-42. PubMed ID: 19933322
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.