231 related articles for article (PubMed ID: 31886476)
1. Bringing data from curated pathway resources to Cytoscape with OmniPath.
Ceccarelli F; Turei D; Gabor A; Saez-Rodriguez J
Bioinformatics; 2020 Apr; 36(8):2632-2633. PubMed ID: 31886476
[TBL] [Abstract][Full Text] [Related]
2. A Cytoscape app for motif enumeration with ISMAGS.
Van Parys T; Melckenbeeck I; Houbraken M; Audenaert P; Colle D; Pickavet M; Demeester P; Van de Peer Y
Bioinformatics; 2017 Feb; 33(3):461-463. PubMed ID: 28158465
[TBL] [Abstract][Full Text] [Related]
3. SIGNORApp: a Cytoscape 3 application to access SIGNOR data.
De Marinis I; Lo Surdo P; Cesareni G; Perfetto L
Bioinformatics; 2022 Mar; 38(6):1764-1766. PubMed ID: 34954787
[TBL] [Abstract][Full Text] [Related]
4. Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.
Doncheva NT; Morris JH; Gorodkin J; Jensen LJ
J Proteome Res; 2019 Feb; 18(2):623-632. PubMed ID: 30450911
[TBL] [Abstract][Full Text] [Related]
5. NOA: a cytoscape plugin for network ontology analysis.
Zhang C; Wang J; Hanspers K; Xu D; Chen L; Pico AR
Bioinformatics; 2013 Aug; 29(16):2066-7. PubMed ID: 23749961
[TBL] [Abstract][Full Text] [Related]
6. decoupleR: ensemble of computational methods to infer biological activities from omics data.
Badia-I-Mompel P; Vélez Santiago J; Braunger J; Geiss C; Dimitrov D; Müller-Dott S; Taus P; Dugourd A; Holland CH; Ramirez Flores RO; Saez-Rodriguez J
Bioinform Adv; 2022; 2(1):vbac016. PubMed ID: 36699385
[TBL] [Abstract][Full Text] [Related]
7. cyNeo4j: connecting Neo4j and Cytoscape.
Summer G; Kelder T; Ono K; Radonjic M; Heymans S; Demchak B
Bioinformatics; 2015 Dec; 31(23):3868-9. PubMed ID: 26272981
[TBL] [Abstract][Full Text] [Related]
8. The Cyni framework for network inference in Cytoscape.
Guitart-Pla O; Kustagi M; Rügheimer F; Califano A; Schwikowski B
Bioinformatics; 2015 May; 31(9):1499-501. PubMed ID: 25527096
[TBL] [Abstract][Full Text] [Related]
9. cddApp: a Cytoscape app for accessing the NCBI conserved domain database.
Morris JH; Wu A; Yamashita RA; Marchler-Bauer A; Ferrin TE
Bioinformatics; 2015 Jan; 31(1):134-6. PubMed ID: 25212755
[TBL] [Abstract][Full Text] [Related]
10. ReNE: a cytoscape plugin for regulatory network enhancement.
Politano G; Benso A; Savino A; Di Carlo S
PLoS One; 2014; 9(12):e115585. PubMed ID: 25541727
[TBL] [Abstract][Full Text] [Related]
11. Development and use of a Cytoscape app for GRNCOP2.
Díaz-Montaña JJ; Díaz-Díaz N; Barranco CD; Ponzoni I
Comput Methods Programs Biomed; 2019 Aug; 177():211-218. PubMed ID: 31319950
[TBL] [Abstract][Full Text] [Related]
12. JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks.
Winterhalter C; Widera P; Krasnogor N
Bioinformatics; 2014 Apr; 30(7):1029-30. PubMed ID: 24363376
[TBL] [Abstract][Full Text] [Related]
13. CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
Kutmon M; Ehrhart F; Willighagen EL; Evelo CT; Coort SL
F1000Res; 2018; 7():. PubMed ID: 31489175
[TBL] [Abstract][Full Text] [Related]
14. XlinkCyNET: A Cytoscape Application for Visualization of Protein Interaction Networks Based on Cross-Linking Mass Spectrometry Identifications.
Lima DB; Zhu Y; Liu F
J Proteome Res; 2021 Apr; 20(4):1943-1950. PubMed ID: 33689356
[TBL] [Abstract][Full Text] [Related]
15. OCSANA+: optimal control and simulation of signaling networks from network analysis.
Marazzi L; Gainer-Dewar A; Vera-Licona P
Bioinformatics; 2020 Dec; 36(19):4960-4962. PubMed ID: 32879935
[TBL] [Abstract][Full Text] [Related]
16. GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.
Montojo J; Zuberi K; Rodriguez H; Kazi F; Wright G; Donaldson SL; Morris Q; Bader GD
Bioinformatics; 2010 Nov; 26(22):2927-8. PubMed ID: 20926419
[TBL] [Abstract][Full Text] [Related]
17. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis.
Wu L; Li M; Wang J; Wu FX
Bioinformatics; 2018 Apr; 34(8):1428-1430. PubMed ID: 29186337
[TBL] [Abstract][Full Text] [Related]
18. CytoGEDEVO-global alignment of biological networks with Cytoscape.
Malek M; Ibragimov R; Albrecht M; Baumbach J
Bioinformatics; 2016 Apr; 32(8):1259-61. PubMed ID: 26669930
[TBL] [Abstract][Full Text] [Related]
19. IntAct App: a Cytoscape application for molecular interaction network visualization and analysis.
Ragueneau E; Shrivastava A; Morris JH; Del-Toro N; Hermjakob H; Porras P
Bioinformatics; 2021 Oct; 37(20):3684-3685. PubMed ID: 33961020
[TBL] [Abstract][Full Text] [Related]
20. DyNet: visualization and analysis of dynamic molecular interaction networks.
Goenawan IH; Bryan K; Lynn DJ
Bioinformatics; 2016 Sep; 32(17):2713-5. PubMed ID: 27153624
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]