These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 31891531)

  • 1. Sparse Binary Relation Representations for Genome Graph Annotation.
    Karasikov M; Mustafa H; Joudaki A; Javadzadeh-No S; Rätsch G; Kahles A
    J Comput Biol; 2020 Apr; 27(4):626-639. PubMed ID: 31891531
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Lossless indexing with counting de Bruijn graphs.
    Karasikov M; Mustafa H; Rätsch G; Kahles A
    Genome Res; 2022 Sep; 32(9):1754-1764. PubMed ID: 35609994
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Topology-based sparsification of graph annotations.
    Danciu D; Karasikov M; Mustafa H; Kahles A; Rätsch G
    Bioinformatics; 2021 Jul; 37(Suppl_1):i169-i176. PubMed ID: 34252940
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph.
    Benoit G; Lemaitre C; Lavenier D; Drezen E; Dayris T; Uricaru R; Rizk G
    BMC Bioinformatics; 2015 Sep; 16():288. PubMed ID: 26370285
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integrating long-range connectivity information into de Bruijn graphs.
    Turner I; Garimella KV; Iqbal Z; McVean G
    Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs.
    Fiedler L; Bernt M; Middendorf M; Stadler PF
    BMC Bioinformatics; 2023 Jun; 24(1):235. PubMed ID: 37277700
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A space and time-efficient index for the compacted colored de Bruijn graph.
    Almodaresi F; Sarkar H; Srivastava A; Patro R
    Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Modified HuffBit Compress Algorithm - An Application of R.
    Habib N; Ahmed K; Jabin I; Rahman MM
    J Integr Bioinform; 2018 Feb; 15(3):. PubMed ID: 29470175
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Efficient Colored de Bruijn Graph for Indexing Reads.
    Hasegawa N; Shimizu K
    J Comput Biol; 2023 Jun; 30(6):648-662. PubMed ID: 37115583
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dynamic compression schemes for graph coloring.
    Mustafa H; Schilken I; Karasikov M; Eickhoff C; Rätsch G; Kahles A
    Bioinformatics; 2019 Feb; 35(3):407-414. PubMed ID: 30020403
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Constructing small genome graphs via string compression.
    Qiu Y; Kingsford C
    Bioinformatics; 2021 Jul; 37(Suppl_1):i205-i213. PubMed ID: 34252955
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Enhanced Compression of
    Rossignolo E; Comin M
    J Comput Biol; 2024 Jun; 31(6):524-538. PubMed ID: 38820168
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
    Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V
    BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Dynamic Alignment-Free and Reference-Free Read Compression.
    Holley G; Wittler R; Stoye J; Hach F
    J Comput Biol; 2018 Jul; 25(7):825-836. PubMed ID: 30011247
    [TBL] [Abstract][Full Text] [Related]  

  • 15. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
    Safonova Y; Bankevich A; Pevzner PA
    J Comput Biol; 2015 Jun; 22(6):528-45. PubMed ID: 25734602
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Practical dynamic de Bruijn graphs.
    Crawford VG; Kuhnle A; Boucher C; Chikhi R; Gagie T
    Bioinformatics; 2018 Dec; 34(24):4189-4195. PubMed ID: 29939217
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs.
    Heydari M; Miclotte G; Van de Peer Y; Fostier J
    BMC Bioinformatics; 2018 Sep; 19(1):311. PubMed ID: 30180801
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assembly of long error-prone reads using de Bruijn graphs.
    Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA
    Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression.
    Liu Y; Li J
    PLoS Comput Biol; 2021 Jul; 17(7):e1009229. PubMed ID: 34280186
    [TBL] [Abstract][Full Text] [Related]  

  • 20. On the representation of de Bruijn graphs.
    Chikhi R; Limasset A; Jackman S; Simpson JT; Medvedev P
    J Comput Biol; 2015 May; 22(5):336-52. PubMed ID: 25629448
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.