These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 31893286)

  • 41. Indexing
    Shibuya Y; Comin M
    J Bioinform Comput Biol; 2019 Oct; 17(5):1940011. PubMed ID: 31856669
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Minimap2: pairwise alignment for nucleotide sequences.
    Li H
    Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Data-dependent bucketing improves reference-free compression of sequencing reads.
    Patro R; Kingsford C
    Bioinformatics; 2015 Sep; 31(17):2770-7. PubMed ID: 25910696
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.
    Dai H; Guan Y
    Bioinformatics; 2020 May; 36(10):3254-3256. PubMed ID: 32091581
    [TBL] [Abstract][Full Text] [Related]  

  • 45. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
    Paridaens T; Van Wallendael G; De Neve W; Lambert P
    Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
    [TBL] [Abstract][Full Text] [Related]  

  • 46. NextPolish: a fast and efficient genome polishing tool for long-read assembly.
    Hu J; Fan J; Sun Z; Liu S
    Bioinformatics; 2020 Apr; 36(7):2253-2255. PubMed ID: 31778144
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Lossy compression of quality scores in genomic data.
    Cánovas R; Moffat A; Turpin A
    Bioinformatics; 2014 Aug; 30(15):2130-6. PubMed ID: 24728856
    [TBL] [Abstract][Full Text] [Related]  

  • 48. FCLQC: fast and concurrent lossless quality scores compressor.
    Cho M; No A
    BMC Bioinformatics; 2021 Dec; 22(1):606. PubMed ID: 34930110
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Compression of DNA sequence reads in FASTQ format.
    Deorowicz S; Grabowski S
    Bioinformatics; 2011 Mar; 27(6):860-2. PubMed ID: 21252073
    [TBL] [Abstract][Full Text] [Related]  

  • 50. METHCOMP: a special purpose compression platform for DNA methylation data.
    Peng J; Milenkovic O; Ochoa I
    Bioinformatics; 2018 Aug; 34(15):2654-2656. PubMed ID: 29528370
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 52. CRAM 3.1: advances in the CRAM file format.
    Bonfield JK
    Bioinformatics; 2022 Mar; 38(6):1497-1503. PubMed ID: 34999766
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments.
    Darvish M; Seiler E; Mehringer S; Rahn R; Reinert K
    Bioinformatics; 2022 Sep; 38(17):4100-4108. PubMed ID: 35801930
    [TBL] [Abstract][Full Text] [Related]  

  • 54. ChIPWig: a random access-enabling lossless and lossy compression method for ChIP-seq data.
    Ravanmehr V; Kim M; Wang Z; Milenkovic O
    Bioinformatics; 2018 Mar; 34(6):911-919. PubMed ID: 29087447
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Compression of next-generation sequencing reads aided by highly efficient de novo assembly.
    Jones DC; Ruzzo WL; Peng X; Katze MG
    Nucleic Acids Res; 2012 Dec; 40(22):e171. PubMed ID: 22904078
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Efficient DNA sequence compression with neural networks.
    Silva M; Pratas D; Pinho AJ
    Gigascience; 2020 Nov; 9(11):. PubMed ID: 33179040
    [TBL] [Abstract][Full Text] [Related]  

  • 57. A compressive seeding algorithm in conjunction with reordering-based compression.
    Ji F; Zhou Q; Ruan J; Zhu Z; Liu X
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38377404
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Transformations for the compression of FASTQ quality scores of next-generation sequencing data.
    Wan R; Anh VN; Asai K
    Bioinformatics; 2012 Mar; 28(5):628-35. PubMed ID: 22171329
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Allowing mutations in maximal matches boosts genome compression performance.
    Liu Y; Wong L; Li J
    Bioinformatics; 2020 Sep; 36(18):4675-4681. PubMed ID: 33118018
    [TBL] [Abstract][Full Text] [Related]  

  • 60. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.