These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 31904419)

  • 1. CIRCexplorer3: A CLEAR Pipeline for Direct Comparison of Circular and Linear RNA Expression.
    Ma XK; Wang MR; Liu CX; Dong R; Carmichael GG; Chen LL; Yang L
    Genomics Proteomics Bioinformatics; 2019 Oct; 17(5):511-521. PubMed ID: 31904419
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CIRCexplorer pipelines for circRNA annotation and quantification from non-polyadenylated RNA-seq datasets.
    Ma XK; Xue W; Chen LL; Yang L
    Methods; 2021 Dec; 196():3-10. PubMed ID: 33588028
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing.
    Humphreys DT; Fossat N; Demuth M; Tam PPL; Ho JWK
    Nucleic Acids Res; 2019 Nov; 47(20):e123. PubMed ID: 31435647
    [TBL] [Abstract][Full Text] [Related]  

  • 4. CircAST: Full-length Assembly and Quantification of Alternatively Spliced Isoforms in Circular RNAs.
    Wu J; Li Y; Wang C; Cui Y; Xu T; Wang C; Wang X; Sha J; Jiang B; Wang K; Hu Z; Guo X; Song X
    Genomics Proteomics Bioinformatics; 2019 Oct; 17(5):522-534. PubMed ID: 32007626
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Screening circular RNAs with functional potential using the RfxCas13d/BSJ-gRNA system.
    Li S; Wu H; Chen LL
    Nat Protoc; 2022 Sep; 17(9):2085-2107. PubMed ID: 35831613
    [TBL] [Abstract][Full Text] [Related]  

  • 6. AQUARIUM: accurate quantification of circular isoforms using model-based strategy.
    Wen G; Li M; Li F; Yang Z; Zhou T; Gu W
    Bioinformatics; 2021 Dec; 37(24):4879-4881. PubMed ID: 34115093
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DEBKS: A Tool to Detect Differentially Expressed Circular RNAs.
    Liu Z; Ding H; She J; Chen C; Zhang W; Yang E
    Genomics Proteomics Bioinformatics; 2022 Jun; 20(3):549-556. PubMed ID: 33631429
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Reverse complementary matches simultaneously promote both back-splicing and exon-skipping.
    Cao D
    BMC Genomics; 2021 Aug; 22(1):586. PubMed ID: 34344317
    [TBL] [Abstract][Full Text] [Related]  

  • 9. circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.
    Chen L; Wang F; Bruggeman EC; Li C; Yao B
    Bioinformatics; 2020 Jan; 36(2):539-545. PubMed ID: 31373611
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.
    Robic A; Faraut T; Djebali S; Weikard R; Feve K; Maman S; Kuehn C
    RNA Biol; 2019 Sep; 16(9):1190-1204. PubMed ID: 31120323
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The Functional Circular RNA Screening via RfxCas13d/BSJ-gRNA System.
    Wu H; Chen LL
    Methods Mol Biol; 2024; 2765():173-191. PubMed ID: 38381340
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Circall: fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data.
    Nguyen DT; Trac QT; Nguyen TH; Nguyen HN; Ohad N; Pawitan Y; Vu TN
    BMC Bioinformatics; 2021 Oct; 22(1):495. PubMed ID: 34645386
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Accurate quantification of circular RNAs identifies extensive circular isoform switching events.
    Zhang J; Chen S; Yang J; Zhao F
    Nat Commun; 2020 Jan; 11(1):90. PubMed ID: 31900416
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reconstruction of full-length circular RNAs enables isoform-level quantification.
    Zheng Y; Ji P; Chen S; Hou L; Zhao F
    Genome Med; 2019 Jan; 11(1):2. PubMed ID: 30660194
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2.
    Gaffo E; Buratin A; Dal Molin A; Bortoluzzi S
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34698333
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quantifying circular RNA expression from RNA-seq data using model-based framework.
    Li M; Xie X; Zhou J; Sheng M; Yin X; Ko EA; Zhou T; Gu W
    Bioinformatics; 2017 Jul; 33(14):2131-2139. PubMed ID: 28334396
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CircRNAFisher: a systematic computational approach for de novo circular RNA identification.
    Jia GY; Wang DL; Xue MZ; Liu YW; Pei YC; Yang YQ; Xu JM; Liang YC; Wang P
    Acta Pharmacol Sin; 2019 Jan; 40(1):55-63. PubMed ID: 30013032
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Knockout of circRNAs by base editing back-splice sites of circularized exons.
    Gao X; Ma XK; Li X; Li GW; Liu CX; Zhang J; Wang Y; Wei J; Chen J; Chen LL; Yang L
    Genome Biol; 2022 Jan; 23(1):16. PubMed ID: 35012611
    [TBL] [Abstract][Full Text] [Related]  

  • 19. circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing.
    Liu Z; Tao C; Li S; Du M; Bai Y; Hu X; Li Y; Chen J; Yang E
    Elife; 2021 Oct; 10():. PubMed ID: 34647522
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assessing the impacts of various factors on circular RNA reliability.
    Chuang TJ; Chiang TW; Chen CY
    Life Sci Alliance; 2023 May; 6(5):. PubMed ID: 36849251
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.