These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 31905005)

  • 21. RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning.
    Singh J; Hanson J; Paliwal K; Zhou Y
    Nat Commun; 2019 Nov; 10(1):5407. PubMed ID: 31776342
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
    Sloma MF; Mathews DH
    PLoS Comput Biol; 2017 Nov; 13(11):e1005827. PubMed ID: 29107980
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Partition function and base pairing probabilities for RNA-RNA interaction prediction.
    Huang FW; Qin J; Reidys CM; Stadler PF
    Bioinformatics; 2009 Oct; 25(20):2646-54. PubMed ID: 19671692
    [TBL] [Abstract][Full Text] [Related]  

  • 24. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
    Liu H; Xu D; Shao J; Wang Y
    Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
    Al-Khatib RM; Rashid NA; Abdullah R
    J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RnaPredict--an evolutionary algorithm for RNA secondary structure prediction.
    Wiese K; Deschenes A; Hendriks A
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(1):25-41. PubMed ID: 18245873
    [TBL] [Abstract][Full Text] [Related]  

  • 27. SARNA-Predict: accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
    Tsang HH; Wiese KC
    IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):727-40. PubMed ID: 21030739
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Network Properties of the Ensemble of RNA Structures.
    Clote P; Bayegan A
    PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization.
    Mathews DH
    RNA; 2004 Aug; 10(8):1178-90. PubMed ID: 15272118
    [TBL] [Abstract][Full Text] [Related]  

  • 30. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Blind tests of RNA nearest-neighbor energy prediction.
    Chou FC; Kladwang W; Kappel K; Das R
    Proc Natl Acad Sci U S A; 2016 Jul; 113(30):8430-5. PubMed ID: 27402765
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Stacking geometry for non-canonical G:U wobble base pair containing dinucleotide sequences in RNA: dispersion-corrected DFT-D study.
    Mondal M; Mukherjee S; Halder S; Bhattacharyya D
    Biopolymers; 2015 Jun; 103(6):328-38. PubMed ID: 25652776
    [TBL] [Abstract][Full Text] [Related]  

  • 33. On the firefighter problem with spreading vaccination for maximizing the number of saved nodes: the IP model and LP rounding algorithms.
    Yang Y; Chen PA; Lee YC; Fanchiang YY
    Optim Lett; 2022 Dec; ():1-20. PubMed ID: 36597504
    [TBL] [Abstract][Full Text] [Related]  

  • 34. An algorithm for the energy barrier problem without pseudoknots and temporary arcs.
    Thachuk C; Manuch J; Rafiey A; Mathieson LA; Stacho L; Condon A
    Pac Symp Biocomput; 2010; ():108-19. PubMed ID: 19908363
    [TBL] [Abstract][Full Text] [Related]  

  • 35. On the page number of RNA secondary structures with pseudoknots.
    Clote P; Dobrev S; Dotu I; Kranakis E; Krizanc D; Urrutia J
    J Math Biol; 2012 Dec; 65(6-7):1337-57. PubMed ID: 22159642
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Efficient RNA structure comparison algorithms.
    Arslan AN; Anandan J; Fry E; Monschke K; Ganneboina N; Bowerman J
    J Bioinform Comput Biol; 2017 Dec; 15(6):1740009. PubMed ID: 29113560
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Thermodynamics of unpaired terminal nucleotides on short RNA helixes correlates with stacking at helix termini in larger RNAs.
    Burkard ME; Kierzek R; Turner DH
    J Mol Biol; 1999 Jul; 290(5):967-82. PubMed ID: 10438596
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Watson-Crick pairing, the Heisenberg group and Milnor invariants.
    Gadgil S
    J Math Biol; 2009 Jul; 59(1):123-42. PubMed ID: 18830596
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Modeling RNA secondary structure folding ensembles using SHAPE mapping data.
    Spasic A; Assmann SM; Bevilacqua PC; Mathews DH
    Nucleic Acids Res; 2018 Jan; 46(1):314-323. PubMed ID: 29177466
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Combinatorics of RNA Secondary Structures with Base Triples.
    Müller R; Nebel ME
    J Comput Biol; 2015 Jul; 22(7):619-48. PubMed ID: 26098199
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.