143 related articles for article (PubMed ID: 31911812)
1. Non-parametric correction of estimated gene trees using TRACTION.
Christensen S; Molloy EK; Vachaspati P; Yammanuru A; Warnow T
Algorithms Mol Biol; 2020; 15():1. PubMed ID: 31911812
[TBL] [Abstract][Full Text] [Related]
2. OCTAL: Optimal Completion of gene trees in polynomial time.
Christensen S; Molloy EK; Vachaspati P; Warnow T
Algorithms Mol Biol; 2018; 13():6. PubMed ID: 29568323
[TBL] [Abstract][Full Text] [Related]
3. Weighted ASTRID: fast and accurate species trees from weighted internode distances.
Liu B; Warnow T
Algorithms Mol Biol; 2023 Jul; 18(1):6. PubMed ID: 37468904
[TBL] [Abstract][Full Text] [Related]
4. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.
Chaudhary R; Burleigh JG; Fernández-Baca D
Algorithms Mol Biol; 2013 Nov; 8(1):28. PubMed ID: 24180377
[TBL] [Abstract][Full Text] [Related]
5. DISCO+QR: rooting species trees in the presence of GDL and ILS.
Willson J; Tabatabaee Y; Liu B; Warnow T
Bioinform Adv; 2023; 3(1):vbad015. PubMed ID: 36789293
[TBL] [Abstract][Full Text] [Related]
6. Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer.
Davidson R; Vachaspati P; Mirarab S; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S1. PubMed ID: 26450506
[TBL] [Abstract][Full Text] [Related]
7. Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss.
Legried B; Molloy EK; Warnow T; Roch S
J Comput Biol; 2021 May; 28(5):452-468. PubMed ID: 33325781
[TBL] [Abstract][Full Text] [Related]
8. Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.
Chung Y; Ané C
Syst Biol; 2011 May; 60(3):261-75. PubMed ID: 21368324
[TBL] [Abstract][Full Text] [Related]
9. A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem.
Briand S; Dessimoz C; El-Mabrouk N; Nevers Y
Syst Biol; 2022 Oct; 71(6):1391-1403. PubMed ID: 35426933
[TBL] [Abstract][Full Text] [Related]
10. Estimating optimal species trees from incomplete gene trees under deep coalescence.
Bayzid MS; Warnow T
J Comput Biol; 2012 Jun; 19(6):591-605. PubMed ID: 22697236
[TBL] [Abstract][Full Text] [Related]
11. Species Tree Estimation from Gene Trees by Minimizing Deep Coalescence and Maximizing Quartet Consistency: A Comparative Study and the Presence of Pseudo Species Tree Terraces.
Farah IT; Islam M; Zinat KT; Rahman AH; Bayzid S
Syst Biol; 2021 Oct; 70(6):1213-1231. PubMed ID: 33844023
[TBL] [Abstract][Full Text] [Related]
12. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
Mirarab S; Bayzid MS; Warnow T
Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
[TBL] [Abstract][Full Text] [Related]
13. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
Roch S; Warnow T
Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
[TBL] [Abstract][Full Text] [Related]
14. Expected pairwise congruence among gene trees under the coalescent model.
Tian Y; Kubatko LS
Mol Phylogenet Evol; 2017 Jan; 106():144-150. PubMed ID: 27693467
[TBL] [Abstract][Full Text] [Related]
15. Linear-time algorithms for phylogenetic tree completion under Robinson-Foulds distance.
Bansal MS
Algorithms Mol Biol; 2020; 15():6. PubMed ID: 32313549
[TBL] [Abstract][Full Text] [Related]
16. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
17. Are the duplication cost and Robinson-Foulds distance equivalent?
Zheng Y; Zhang L
J Comput Biol; 2014 Aug; 21(8):578-90. PubMed ID: 24988427
[TBL] [Abstract][Full Text] [Related]
18. Naive binning improves phylogenomic analyses.
Bayzid MS; Warnow T
Bioinformatics; 2013 Sep; 29(18):2277-84. PubMed ID: 23842808
[TBL] [Abstract][Full Text] [Related]
19. FastMulRFS: fast and accurate species tree estimation under generic gene duplication and loss models.
Molloy EK; Warnow T
Bioinformatics; 2020 Jul; 36(Suppl_1):i57-i65. PubMed ID: 32657396
[TBL] [Abstract][Full Text] [Related]
20. GeneRax: A Tool for Species-Tree-Aware Maximum Likelihood-Based Gene Family Tree Inference under Gene Duplication, Transfer, and Loss.
Morel B; Kozlov AM; Stamatakis A; Szöllősi GJ
Mol Biol Evol; 2020 Sep; 37(9):2763-2774. PubMed ID: 32502238
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
