These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 31932773)

  • 1. Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies.
    Vermeulen C; Allahyar A; Bouwman BAM; Krijger PHL; Verstegen MJAM; Geeven G; Valdes-Quezada C; Renkens I; Straver R; Kloosterman WP; de Ridder J; de Laat W
    Nat Protoc; 2020 Feb; 15(2):364-397. PubMed ID: 31932773
    [TBL] [Abstract][Full Text] [Related]  

  • 2. 4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis.
    Krijger PHL; Geeven G; Bianchi V; Hilvering CRE; de Laat W
    Methods; 2020 Jan; 170():17-32. PubMed ID: 31351925
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.
    Gheldof N; Leleu M; Noordermeer D; Rougemont J; Reymond A
    Methods Mol Biol; 2012; 786():211-25. PubMed ID: 21938629
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Enhancer hubs and loop collisions identified from single-allele topologies.
    Allahyar A; Vermeulen C; Bouwman BAM; Krijger PHL; Verstegen MJAM; Geeven G; van Kranenburg M; Pieterse M; Straver R; Haarhuis JHI; Jalink K; Teunissen H; Renkens IJ; Kloosterman WP; Rowland BD; de Wit E; de Ridder J; de Laat W
    Nat Genet; 2018 Aug; 50(8):1151-1160. PubMed ID: 29988121
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unbiased Interrogation of 3D Genome Topology Using Chromosome Conformation Capture Coupled to High-Throughput Sequencing (4C-Seq).
    Brouwer RW; van den Hout MC; van IJcken WF; Soler E; Stadhouders R
    Methods Mol Biol; 2017; 1507():199-220. PubMed ID: 27832542
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Circular Chromosome Conformation Capture Sequencing (4C-Seq ) in Primary Adherent Cells.
    Marsman J; Day RC; Gimenez G
    Methods Mol Biol; 2022; 2458():301-320. PubMed ID: 35103974
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-throughput Identification of Gene Regulatory Sequences Using Next-generation Sequencing of Circular Chromosome Conformation Capture (4C-seq).
    Brettmann EA; Oh IY; de Guzman Strong C
    J Vis Exp; 2018 Oct; (140):. PubMed ID: 30346381
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.
    Splinter E; de Wit E; van de Werken HJ; Klous P; de Laat W
    Methods; 2012 Nov; 58(3):221-30. PubMed ID: 22609568
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 4C-Seq: Interrogating Chromatin Looping with Circular Chromosome Conformation Capture.
    Karasu N; Sexton T
    Methods Mol Biol; 2021; 2157():19-34. PubMed ID: 32820397
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq).
    Matelot M; Noordermeer D
    Methods Mol Biol; 2016; 1480():223-41. PubMed ID: 27659989
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Multiplex chromatin interactions with single-molecule precision.
    Zheng M; Tian SZ; Capurso D; Kim M; Maurya R; Lee B; Piecuch E; Gong L; Zhu JJ; Li Z; Wong CH; Ngan CY; Wang P; Ruan X; Wei CL; Ruan Y
    Nature; 2019 Feb; 566(7745):558-562. PubMed ID: 30778195
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Subtelomeric Chromatin Structure by Chromosome Conformation Capture (3C)-qPCR Methodology in Candida glabrata.
    López-Fuentes E; Hernández-Hernández G; De Las Peñas A; Castaño I
    Methods Mol Biol; 2022; 2542():71-89. PubMed ID: 36008657
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.
    Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y
    J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 4C technology: protocols and data analysis.
    van de Werken HJ; de Vree PJ; Splinter E; Holwerda SJ; Klous P; de Wit E; de Laat W
    Methods Enzymol; 2012; 513():89-112. PubMed ID: 22929766
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromosome Conformation Capture on Chip (4C): Data Processing.
    Leblanc B; Comet I; Bantignies F; Cavalli G
    Methods Mol Biol; 2016; 1480():243-61. PubMed ID: 27659990
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Mapping networks of physical interactions between genomic elements using 5C technology.
    Dostie J; Dekker J
    Nat Protoc; 2007; 2(4):988-1002. PubMed ID: 17446898
    [TBL] [Abstract][Full Text] [Related]  

  • 17. 3C-digital PCR for quantification of chromatin interactions.
    Du M; Wang L
    BMC Mol Biol; 2016 Dec; 17(1):23. PubMed ID: 27923366
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extracting multi-way chromatin contacts from Hi-C data.
    Liu L; Zhang B; Hyeon C
    PLoS Comput Biol; 2021 Dec; 17(12):e1009669. PubMed ID: 34871311
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
    Buisine N; Ruan X; Ruan Y; Sachs LM
    Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895565
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical modeling and significance estimation of multi-way chromatin contacts with HyperloopFinder.
    Wang W; Ye Y; Gao L
    Brief Bioinform; 2024 May; 25(4):. PubMed ID: 39003726
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.