BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 31934349)

  • 1. A scalable method for parameter-free simulation and validation of mechanistic cellular signal transduction network models.
    Romers J; Thieme S; Münzner U; Krantz M
    NPJ Syst Biol Appl; 2020; 6():2. PubMed ID: 31934349
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using rxncon to Develop Rule-Based Models.
    Romers J; Thieme S; Münzner U; Krantz M
    Methods Mol Biol; 2019; 1945():71-118. PubMed ID: 30945243
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.
    Mori T; Flöttmann M; Krantz M; Akutsu T; Klipp E
    BMC Syst Biol; 2015 Aug; 9():45. PubMed ID: 26259567
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Reaction-contingency based bipartite Boolean modelling.
    Flöttmann M; Krause F; Klipp E; Krantz M
    BMC Syst Biol; 2013 Jul; 7():58. PubMed ID: 23835289
    [TBL] [Abstract][Full Text] [Related]  

  • 5. kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models.
    Carretero Chavez W; Krantz M; Klipp E; Kufareva I
    BMC Bioinformatics; 2023 Jun; 24(1):246. PubMed ID: 37308855
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RuleMonkey: software for stochastic simulation of rule-based models.
    Colvin J; Monine MI; Gutenkunst RN; Hlavacek WS; Von Hoff DD; Posner RG
    BMC Bioinformatics; 2010 Jul; 11():404. PubMed ID: 20673321
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PATHLOGIC-S: a scalable Boolean framework for modelling cellular signalling.
    Fearnley LG; Nielsen LK
    PLoS One; 2012; 7(8):e41977. PubMed ID: 22879903
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae.
    Münzner U; Klipp E; Krantz M
    Nat Commun; 2019 Mar; 10(1):1308. PubMed ID: 30899000
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Scalable Parameter Estimation for Genome-Scale Biochemical Reaction Networks.
    Fröhlich F; Kaltenbacher B; Theis FJ; Hasenauer J
    PLoS Comput Biol; 2017 Jan; 13(1):e1005331. PubMed ID: 28114351
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Understanding human metabolic physiology: a genome-to-systems approach.
    Mo ML; Palsson BØ
    Trends Biotechnol; 2009 Jan; 27(1):37-44. PubMed ID: 19010556
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Recipes for Analysis of Molecular Networks Using the Data2Dynamics Modeling Environment.
    Steiert B; Kreutz C; Raue A; Timmer J
    Methods Mol Biol; 2019; 1945():341-362. PubMed ID: 30945255
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computational modeling of signal transduction networks: a pedagogical exposition.
    Prasad A
    Methods Mol Biol; 2012; 880():219-41. PubMed ID: 23361987
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Qualitative networks: a symbolic approach to analyze biological signaling networks.
    Schaub MA; Henzinger TA; Fisher J
    BMC Syst Biol; 2007 Jan; 1():4. PubMed ID: 17408511
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Elementary signaling modes predict the essentiality of signal transduction network components.
    Wang RS; Albert R
    BMC Syst Biol; 2011 Mar; 5():44. PubMed ID: 21426566
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Boolean modeling in systems biology: an overview of methodology and applications.
    Wang RS; Saadatpour A; Albert R
    Phys Biol; 2012 Oct; 9(5):055001. PubMed ID: 23011283
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dynamic simulation of regulatory networks using SQUAD.
    Di Cara A; Garg A; De Micheli G; Xenarios I; Mendoza L
    BMC Bioinformatics; 2007 Nov; 8():462. PubMed ID: 18039375
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Constraint-based models predict metabolic and associated cellular functions.
    Bordbar A; Monk JM; King ZA; Palsson BO
    Nat Rev Genet; 2014 Feb; 15(2):107-20. PubMed ID: 24430943
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Generalizing Gillespie's Direct Method to Enable Network-Free Simulations.
    Suderman R; Mitra ED; Lin YT; Erickson KE; Feng S; Hlavacek WS
    Bull Math Biol; 2019 Aug; 81(8):2822-2848. PubMed ID: 29594824
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An insight to flux-balance analysis for biochemical networks.
    Anand S; Mukherjee K; Padmanabhan P
    Biotechnol Genet Eng Rev; 2020 Apr; 36(1):32-55. PubMed ID: 33292061
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z; Klipp E
    Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.