290 related articles for article (PubMed ID: 31939734)
1. CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications.
Franch-Expósito S; Bassaganyas L; Vila-Casadesús M; Hernández-Illán E; Esteban-Fabró R; Díaz-Gay M; Lozano JJ; Castells A; Llovet JM; Castellví-Bel S; Camps J
Elife; 2020 Jan; 9():. PubMed ID: 31939734
[TBL] [Abstract][Full Text] [Related]
2. Novel insights into breast cancer copy number genetic heterogeneity revealed by single-cell genome sequencing.
Baslan T; Kendall J; Volyanskyy K; McNamara K; Cox H; D'Italia S; Ambrosio F; Riggs M; Rodgers L; Leotta A; Song J; Mao Y; Wu J; Shah R; Gularte-Mérida R; Chadalavada K; Nanjangud G; Varadan V; Gordon A; Curtis C; Krasnitz A; Dimitrova N; Harris L; Wigler M; Hicks J
Elife; 2020 May; 9():. PubMed ID: 32401198
[TBL] [Abstract][Full Text] [Related]
3. Copy-Number Alteration Burden Differentially Impacts Immune Profiles and Molecular Features of Hepatocellular Carcinoma.
Bassaganyas L; Pinyol R; Esteban-Fabró R; Torrens L; Torrecilla S; Willoughby CE; Franch-Expósito S; Vila-Casadesús M; Salaverria I; Montal R; Mazzaferro V; Camps J; Sia D; Llovet JM
Clin Cancer Res; 2020 Dec; 26(23):6350-6361. PubMed ID: 32873569
[TBL] [Abstract][Full Text] [Related]
4. Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes.
Khalil AIS; Khyriem C; Chattopadhyay A; Sanyal A
BMC Bioinformatics; 2020 Apr; 21(1):147. PubMed ID: 32299346
[TBL] [Abstract][Full Text] [Related]
5. Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data.
Kumar N; Cai H; von Mering C; Baudis M
PLoS One; 2012; 7(8):e43689. PubMed ID: 22937079
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide somatic copy number alteration analysis and database construction for cervical cancer.
Luo H; Xu X; Yang J; Wang K; Wang C; Yang P; Cai H
Mol Genet Genomics; 2020 May; 295(3):765-773. PubMed ID: 31901979
[TBL] [Abstract][Full Text] [Related]
7. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Koboldt DC; Zhang Q; Larson DE; Shen D; McLellan MD; Lin L; Miller CA; Mardis ER; Ding L; Wilson RK
Genome Res; 2012 Mar; 22(3):568-76. PubMed ID: 22300766
[TBL] [Abstract][Full Text] [Related]
8. DiNAMIC.Duo: detecting somatic DNA copy number differences without a normal reference.
Walter V; Choi HY; Zhao X; Gao Y; Holt J; Hayes DN
Bioinformatics; 2022 Sep; 38(18):4415-4417. PubMed ID: 35924981
[TBL] [Abstract][Full Text] [Related]
9. The repertoire of copy number alteration signatures in human cancer.
Tao Z; Wang S; Wu C; Wu T; Zhao X; Ning W; Wang G; Wang J; Chen J; Diao K; Chen F; Liu XS
Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36806386
[TBL] [Abstract][Full Text] [Related]
10. Genome-wide copy number alterations in subtypes of invasive breast cancers in young white and African American women.
Loo LW; Wang Y; Flynn EM; Lund MJ; Bowles EJ; Buist DS; Liff JM; Flagg EW; Coates RJ; Eley JW; Hsu L; Porter PL
Breast Cancer Res Treat; 2011 May; 127(1):297-308. PubMed ID: 21264507
[TBL] [Abstract][Full Text] [Related]
11. Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis.
Wang G; Anastassiou D
Sci Rep; 2020 Oct; 10(1):17199. PubMed ID: 33057153
[TBL] [Abstract][Full Text] [Related]
12. Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing.
Zheng C; Miao X; Li Y; Huang Y; Ruan J; Ma X; Wang L; Wu CI; Cai J
Bioinformatics; 2013 Nov; 29(22):2813-21. PubMed ID: 23962614
[TBL] [Abstract][Full Text] [Related]
13. Interactive analysis of large cancer copy number studies with Copy Number Explorer.
Newman S
Bioinformatics; 2015 Sep; 31(17):2874-6. PubMed ID: 25957352
[TBL] [Abstract][Full Text] [Related]
14. Somatic Copy Number Alterations and Associated Genes in Clear-Cell Renal-Cell Carcinoma in Brazilian Patients.
Fernandes FG; Silveira HCS; Júnior JNA; da Silveira RA; Zucca LE; Cárcano FM; Sanches AON; Neder L; Scapulatempo-Neto C; Serrano SV; Jonasch E; Reis RM; Evangelista AF
Int J Mol Sci; 2021 Feb; 22(5):. PubMed ID: 33668731
[TBL] [Abstract][Full Text] [Related]
15. Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer.
Staaf J; Jönsson G; Ringnér M; Baldetorp B; Borg A
Breast Cancer Res; 2011; 13(6):R129. PubMed ID: 22169037
[TBL] [Abstract][Full Text] [Related]
16. CONSERTING: integrating copy-number analysis with structural-variation detection.
Chen X; Gupta P; Wang J; Nakitandwe J; Roberts K; Dalton JD; Parker M; Patel S; Holmfeldt L; Payne D; Easton J; Ma J; Rusch M; Wu G; Patel A; Baker SJ; Dyer MA; Shurtleff S; Espy S; Pounds S; Downing JR; Ellison DW; Mullighan CG; Zhang J
Nat Methods; 2015 Jun; 12(6):527-30. PubMed ID: 25938371
[TBL] [Abstract][Full Text] [Related]
17. Identification of driver genes regulating immune cell infiltration in cervical cancer by multiple omics integration.
Wen Y; Zhang S; Yang J; Guo D
Biomed Pharmacother; 2019 Dec; 120():109546. PubMed ID: 31675687
[TBL] [Abstract][Full Text] [Related]
18. Single-cell sequencing deciphers a convergent evolution of copy number alterations from primary to circulating tumor cells.
Gao Y; Ni X; Guo H; Su Z; Ba Y; Tong Z; Guo Z; Yao X; Chen X; Yin J; Yan Z; Guo L; Liu Y; Bai F; Xie XS; Zhang N
Genome Res; 2017 Aug; 27(8):1312-1322. PubMed ID: 28487279
[TBL] [Abstract][Full Text] [Related]
19. Whole Genome Pathway Analysis Identifies an Association of Cadmium Response Gene Loss with Copy Number Variation in Mutant p53 Bearing Uterine Endometrial Carcinomas.
Delaney JR; Stupack DG
PLoS One; 2016; 11(7):e0159114. PubMed ID: 27391266
[TBL] [Abstract][Full Text] [Related]
20. A data science approach for the classification of low-grade and high-grade ovarian serous carcinomas.
Lin S; Wang C; Zarei S; Bell DA; Kerr SE; Runger GC; Kocher JA
BMC Genomics; 2018 Nov; 19(1):841. PubMed ID: 30482155
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
