300 related articles for article (PubMed ID: 31947823)
21. Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.
Robic A; Faraut T; Djebali S; Weikard R; Feve K; Maman S; Kuehn C
RNA Biol; 2019 Sep; 16(9):1190-1204. PubMed ID: 31120323
[TBL] [Abstract][Full Text] [Related]
22. Solid-Support Directional (SSD) RNA-Seq as a Companion Method to CLIP-Seq.
Shawky AM; Dondeti M; Mourelatos Z; Vourekas A
Methods Mol Biol; 2022; 2509():251-268. PubMed ID: 35796968
[TBL] [Abstract][Full Text] [Related]
23. dCLIP: a computational approach for comparative CLIP-seq analyses.
Wang T; Xie Y; Xiao G
Genome Biol; 2014 Jan; 15(1):R11. PubMed ID: 24398258
[TBL] [Abstract][Full Text] [Related]
24. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
25. Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Murigneux V; Saulière J; Roest Crollius H; Le Hir H
Methods; 2013 Sep; 63(1):32-40. PubMed ID: 23545196
[TBL] [Abstract][Full Text] [Related]
26. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Drewe-Boss P; Wessels HH; Ohler U
Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
[TBL] [Abstract][Full Text] [Related]
27. A Pipeline for PAR-CLIP Data Analysis.
Jens M
Methods Mol Biol; 2016; 1358():197-207. PubMed ID: 26463385
[TBL] [Abstract][Full Text] [Related]
28. Transcriptome-Wide Profiling of Protein-RNA Interactions by Cross-Linking and Immunoprecipitation Mediated by FLAG-Biotin Tandem Purification.
Bi X; Zhang X; Shen X
J Vis Exp; 2020 May; (159):. PubMed ID: 32478734
[TBL] [Abstract][Full Text] [Related]
29. POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins.
Zhao W; Zhang S; Zhu Y; Xi X; Bao P; Ma Z; Kapral TH; Chen S; Zagrovic B; Yang YT; Lu ZJ
Nucleic Acids Res; 2022 Jan; 50(D1):D287-D294. PubMed ID: 34403477
[TBL] [Abstract][Full Text] [Related]
30. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
[TBL] [Abstract][Full Text] [Related]
31. Human protein-RNA interaction network is highly stable across mammals.
Ramakrishnan A; Janga SC
BMC Genomics; 2019 Dec; 20(Suppl 12):1004. PubMed ID: 31888461
[TBL] [Abstract][Full Text] [Related]
32. SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins.
Chen F; Keleş S
Genome Biol; 2020 Jun; 21(1):139. PubMed ID: 32532357
[TBL] [Abstract][Full Text] [Related]
33. Assessing Computational Steps for CLIP-Seq Data Analysis.
Liu Q; Zhong X; Madison BB; Rustgi AK; Shyr Y
Biomed Res Int; 2015; 2015():196082. PubMed ID: 26539468
[TBL] [Abstract][Full Text] [Related]
34. PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks.
Lin J; Zhang Y; Frankel WN; Ouyang Z
PLoS Comput Biol; 2019 Aug; 15(8):e1007227. PubMed ID: 31425505
[TBL] [Abstract][Full Text] [Related]
35. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
36. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
[TBL] [Abstract][Full Text] [Related]
37. PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.
Chen B; Yun J; Kim MS; Mendell JT; Xie Y
Genome Biol; 2014 Jan; 15(1):R18. PubMed ID: 24451213
[TBL] [Abstract][Full Text] [Related]
38. Bioinformatic Analysis of Circular RNA Expression.
Gaffo E; Buratin A; Dal Molin A; Bortoluzzi S
Methods Mol Biol; 2021; 2348():343-370. PubMed ID: 34160817
[TBL] [Abstract][Full Text] [Related]
39. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
40. seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data.
Chaabane M; Andreeva K; Hwang JY; Kook TL; Park JW; Cooper NGF
PLoS Comput Biol; 2020 Oct; 16(10):e1008338. PubMed ID: 33079938
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]