842 related articles for article (PubMed ID: 31952477)
1. Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
Narayan NR; Weinmaier T; Laserna-Mendieta EJ; Claesson MJ; Shanahan F; Dabbagh K; Iwai S; DeSantis TZ
BMC Genomics; 2020 Jan; 21(1):56. PubMed ID: 31952477
[TBL] [Abstract][Full Text] [Related]
2. Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes.
Iwai S; Weinmaier T; Schmidt BL; Albertson DG; Poloso NJ; Dabbagh K; DeSantis TZ
PLoS One; 2016; 11(11):e0166104. PubMed ID: 27820856
[TBL] [Abstract][Full Text] [Related]
3. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
[TBL] [Abstract][Full Text] [Related]
4. From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.
Mysara M; Njima M; Leys N; Raes J; Monsieurs P
Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369460
[TBL] [Abstract][Full Text] [Related]
5. DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs.
Wei ZG; Zhang SW
J Theor Biol; 2017 Jul; 425():80-87. PubMed ID: 28454900
[TBL] [Abstract][Full Text] [Related]
6. Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.
Aßhauer KP; Wemheuer B; Daniel R; Meinicke P
Bioinformatics; 2015 Sep; 31(17):2882-4. PubMed ID: 25957349
[TBL] [Abstract][Full Text] [Related]
7. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
8. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
[TBL] [Abstract][Full Text] [Related]
9. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
10. PanFP: pangenome-based functional profiles for microbial communities.
Jun SR; Robeson MS; Hauser LJ; Schadt CW; Gorin AA
BMC Res Notes; 2015 Sep; 8():479. PubMed ID: 26409790
[TBL] [Abstract][Full Text] [Related]
11. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
[TBL] [Abstract][Full Text] [Related]
12. OTU analysis using metagenomic shotgun sequencing data.
Hao X; Chen T
PLoS One; 2012; 7(11):e49785. PubMed ID: 23189163
[TBL] [Abstract][Full Text] [Related]
13. IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.
Mysara M; Leys N; Raes J; Monsieurs P
BMC Bioinformatics; 2016 Apr; 17(1):192. PubMed ID: 27130479
[TBL] [Abstract][Full Text] [Related]
14. Large-scale 16S gene assembly using metagenomics shotgun sequences.
Zeng F; Wang Z; Wang Y; Zhou J; Chen T
Bioinformatics; 2017 May; 33(10):1447-1456. PubMed ID: 28158392
[TBL] [Abstract][Full Text] [Related]
15. OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs.
Sovacool KL; Westcott SL; Mumphrey MB; Dotson GA; Schloss PD
mSphere; 2022 Feb; 7(1):e0091621. PubMed ID: 35107341
[TBL] [Abstract][Full Text] [Related]
16. MetAmp: combining amplicon data from multiple markers for OTU analysis.
Zhbannikov IY; Foster JA
Bioinformatics; 2015 Jun; 31(11):1830-2. PubMed ID: 25630378
[TBL] [Abstract][Full Text] [Related]
17. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
18. CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
Kondratenko Y; Korobeynikov A; Lapidus A
BMC Bioinformatics; 2020 Jul; 21(Suppl 12):303. PubMed ID: 32703166
[TBL] [Abstract][Full Text] [Related]
19. LotuS: an efficient and user-friendly OTU processing pipeline.
Hildebrand F; Tadeo R; Voigt AY; Bork P; Raes J
Microbiome; 2014 Sep; 2(1):30. PubMed ID: 27367037
[TBL] [Abstract][Full Text] [Related]
20. Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics.
Shah N; Tang H; Doak TG; Ye Y
Pac Symp Biocomput; 2011; ():165-76. PubMed ID: 21121044
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
