351 related articles for article (PubMed ID: 31959969)
1. Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota.
Whelan FJ; Waddell B; Syed SA; Shekarriz S; Rabin HR; Parkins MD; Surette MG
Nat Microbiol; 2020 Feb; 5(2):379-390. PubMed ID: 31959969
[TBL] [Abstract][Full Text] [Related]
2. Sputum DNA sequencing in cystic fibrosis: non-invasive access to the lung microbiome and to pathogen details.
Feigelman R; Kahlert CR; Baty F; Rassouli F; Kleiner RL; Kohler P; Brutsche MH; von Mering C
Microbiome; 2017 Feb; 5(1):20. PubMed ID: 28187782
[TBL] [Abstract][Full Text] [Related]
3. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
4. Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling.
Lau JT; Whelan FJ; Herath I; Lee CH; Collins SM; Bercik P; Surette MG
Genome Med; 2016 Jul; 8(1):72. PubMed ID: 27363992
[TBL] [Abstract][Full Text] [Related]
5. Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.
Gehrig JL; Portik DM; Driscoll MD; Jackson E; Chakraborty S; Gratalo D; Ashby M; Valladares R
Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35302439
[TBL] [Abstract][Full Text] [Related]
6. Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation.
Nguyen LD; Deschaght P; Merlin S; Loywick A; Audebert C; Van Daele S; Viscogliosi E; Vaneechoutte M; Delhaes L
PLoS One; 2016; 11(12):e0168860. PubMed ID: 28030619
[TBL] [Abstract][Full Text] [Related]
7. Strain-Resolved Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis.
Dmitrijeva M; Kahlert CR; Feigelman R; Kleiner RL; Nolte O; Albrich WC; Baty F; von Mering C
mBio; 2021 Mar; 12(2):. PubMed ID: 33688005
[TBL] [Abstract][Full Text] [Related]
8. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.
Lim YW; Haynes M; Furlan M; Robertson CE; Harris JK; Rohwer F
J Vis Exp; 2014 Dec; (94):. PubMed ID: 25549184
[TBL] [Abstract][Full Text] [Related]
9. Metagenomic sequencing reveals swine lung microbial communities and metagenome-assembled genomes associated with lung lesions-a pilot study.
Li J; Huang T; Zhang M; Tong X; Chen J; Zhang Z; Huang F; Ai H; Huang L
Int Microbiol; 2023 Nov; 26(4):893-906. PubMed ID: 36933182
[TBL] [Abstract][Full Text] [Related]
10. Microbial diversity within the airway microbiome in chronic pediatric lung diseases.
Hahn A; Warnken S; Pérez-Losada M; Freishtat RJ; Crandall KA
Infect Genet Evol; 2018 Sep; 63():316-325. PubMed ID: 29225146
[TBL] [Abstract][Full Text] [Related]
11. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments.
Ruscheweyh HJ; Milanese A; Paoli L; Karcher N; Clayssen Q; Keller MI; Wirbel J; Bork P; Mende DR; Zeller G; Sunagawa S
Microbiome; 2022 Dec; 10(1):212. PubMed ID: 36464731
[TBL] [Abstract][Full Text] [Related]
12. Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples.
Wu-Woods NJ; Barlow JT; Trigodet F; Shaw DG; Romano AE; Jabri B; Eren AM; Ismagilov RF
Nat Methods; 2023 Nov; 20(11):1672-1682. PubMed ID: 37828152
[TBL] [Abstract][Full Text] [Related]
13. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes.
Zhang Y; Ji P; Wang J; Zhao F
Nucleic Acids Res; 2016 Jun; 44(10):e99. PubMed ID: 26984526
[TBL] [Abstract][Full Text] [Related]
14. Insights into the Unique Lung Microbiota Profile of Pulmonary Tuberculosis Patients Using Metagenomic Next-Generation Sequencing.
Xiao G; Cai Z; Guo Q; Ye T; Tang Y; Guan P; Zhang J; Ou M; Fu X; Ren L; Yu M; Wang Z; Liu L; Yang L; Zhang G
Microbiol Spectr; 2022 Feb; 10(1):e0190121. PubMed ID: 35196800
[TBL] [Abstract][Full Text] [Related]
15. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
[TBL] [Abstract][Full Text] [Related]
16. 16S rRNA-Based Microbiota Profiling Assists Conventional Culture Analysis of Airway Samples from Pediatric Cystic Fibrosis Patients.
Kristensen M; de Koff EM; Chu ML; Groendijk S; Tramper-Stranders GA; de Winter-de Groot KM; Janssens HM; Tiddens HA; van Westreenen M; Sanders EAM; Arets BHGM; van der Ent CK; Prevaes SMPJ; Bogaert D
Microbiol Spectr; 2023 Jun; 11(3):e0405722. PubMed ID: 37199622
[TBL] [Abstract][Full Text] [Related]
17. Culture enriched molecular profiling of the cystic fibrosis airway microbiome.
Sibley CD; Grinwis ME; Field TR; Eshaghurshan CS; Faria MM; Dowd SE; Parkins MD; Rabin HR; Surette MG
PLoS One; 2011; 6(7):e22702. PubMed ID: 21829484
[TBL] [Abstract][Full Text] [Related]
18. Practical considerations for sampling and data analysis in contemporary metagenomics-based environmental studies.
Staley C; Sadowsky MJ
J Microbiol Methods; 2018 Nov; 154():14-18. PubMed ID: 30287354
[TBL] [Abstract][Full Text] [Related]
19. Cilantro microbiome before and after nonselective pre-enrichment for Salmonella using 16S rRNA and metagenomic sequencing.
Jarvis KG; White JR; Grim CJ; Ewing L; Ottesen AR; Beaubrun JJ; Pettengill JB; Brown E; Hanes DE
BMC Microbiol; 2015 Aug; 15():160. PubMed ID: 26264042
[TBL] [Abstract][Full Text] [Related]
20. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
