These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 31971565)

  • 61. A novel technique for detecting putative horizontal gene transfer in the sequence space.
    Snir S; Trifonov E
    J Comput Biol; 2010 Nov; 17(11):1535-48. PubMed ID: 20973741
    [TBL] [Abstract][Full Text] [Related]  

  • 62. TriLoNet: Piecing Together Small Networks to Reconstruct Reticulate Evolutionary Histories.
    Oldman J; Wu T; van Iersel L; Moulton V
    Mol Biol Evol; 2016 Aug; 33(8):2151-62. PubMed ID: 27189565
    [TBL] [Abstract][Full Text] [Related]  

  • 63. Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.
    Trappe K; Marschall T; Renard BY
    Bioinformatics; 2016 Sep; 32(17):i595-i604. PubMed ID: 27587679
    [TBL] [Abstract][Full Text] [Related]  

  • 64. Inferring phylogenetic networks by the maximum parsimony criterion: a case study.
    Jin G; Nakhleh L; Snir S; Tuller T
    Mol Biol Evol; 2007 Jan; 24(1):324-37. PubMed ID: 17068107
    [TBL] [Abstract][Full Text] [Related]  

  • 65. Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting.
    Solís-Lemus C; Ané C
    PLoS Genet; 2016 Mar; 12(3):e1005896. PubMed ID: 26950302
    [TBL] [Abstract][Full Text] [Related]  

  • 66. Characterization of reticulate networks based on the coalescent with recombination.
    Arenas M; Valiente G; Posada D
    Mol Biol Evol; 2008 Dec; 25(12):2517-20. PubMed ID: 18927089
    [TBL] [Abstract][Full Text] [Related]  

  • 67. HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer.
    Yuan L; Lu H; Li F; Nielsen J; Kerkhoven EJ
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36752380
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster.
    Sawada H; Suzuki F; Matsuda I; Saitou N
    J Mol Evol; 1999 Nov; 49(5):627-44. PubMed ID: 10552044
    [TBL] [Abstract][Full Text] [Related]  

  • 69. Extended Newick: it is time for a standard representation of phylogenetic networks.
    Cardona G; Rosselló F; Valiente G
    BMC Bioinformatics; 2008 Dec; 9():532. PubMed ID: 19077301
    [TBL] [Abstract][Full Text] [Related]  

  • 70. Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.
    Zhaxybayeva O; Gogarten JP; Charlebois RL; Doolittle WF; Papke RT
    Genome Res; 2006 Sep; 16(9):1099-108. PubMed ID: 16899658
    [TBL] [Abstract][Full Text] [Related]  

  • 71. Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?
    Gambette P; van Iersel L; Kelk S; Pardi F; Scornavacca C
    Bull Math Biol; 2016 Sep; 78(9):1773-1795. PubMed ID: 27659024
    [TBL] [Abstract][Full Text] [Related]  

  • 72. NetRAX: accurate and fast maximum likelihood phylogenetic network inference.
    Lutteropp S; Scornavacca C; Kozlov AM; Morel B; Stamatakis A
    Bioinformatics; 2022 Aug; 38(15):3725-3733. PubMed ID: 35713506
    [TBL] [Abstract][Full Text] [Related]  

  • 73. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
    Mirkin BG; Fenner TI; Galperin MY; Koonin EV
    BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
    [TBL] [Abstract][Full Text] [Related]  

  • 74. CloudPhylo: a fast and scalable tool for phylogeny reconstruction.
    Xu X; Ji Z; Zhang Z
    Bioinformatics; 2017 Feb; 33(3):438-440. PubMed ID: 28172557
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Nonbinary Tree-Based Phylogenetic Networks.
    Jetten L; van Iersel L
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(1):205-217. PubMed ID: 27723601
    [TBL] [Abstract][Full Text] [Related]  

  • 76. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.
    Podell S; Gaasterland T; Allen EE
    BMC Bioinformatics; 2008 Oct; 9():419. PubMed ID: 18840280
    [TBL] [Abstract][Full Text] [Related]  

  • 77. SPECTRE: a suite of phylogenetic tools for reticulate evolution.
    Bastkowski S; Mapleson D; Spillner A; Wu T; Balvociute M; Moulton V
    Bioinformatics; 2018 Mar; 34(6):1056-1057. PubMed ID: 29186450
    [TBL] [Abstract][Full Text] [Related]  

  • 78. A survey of combinatorial methods for phylogenetic networks.
    Huson DH; Scornavacca C
    Genome Biol Evol; 2011; 3():23-35. PubMed ID: 21081312
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Comparison of tree-child phylogenetic networks.
    Cardona G; Rosselló F; Valiente G
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(4):552-69. PubMed ID: 19875855
    [TBL] [Abstract][Full Text] [Related]  

  • 80. AvP: A software package for automatic phylogenetic detection of candidate horizontal gene transfers.
    Koutsovoulos GD; Granjeon Noriot S; Bailly-Bechet M; Danchin EGJ; Rancurel C
    PLoS Comput Biol; 2022 Nov; 18(11):e1010686. PubMed ID: 36350852
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.