These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 31974511)

  • 1. Sodium-induced population shift drives activation of thrombin.
    Kahler U; Kamenik AS; Kraml J; Liedl KR
    Sci Rep; 2020 Jan; 10(1):1086. PubMed ID: 31974511
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Na
    Kurisaki I; Nagaoka M
    J Phys Chem B; 2016 Nov; 120(46):11873-11879. PubMed ID: 27781431
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Expression of allosteric linkage between the sodium ion binding site and exosite I of thrombin during prothrombin activation.
    Kroh HK; Tans G; Nicolaes GA; Rosing J; Bock PE
    J Biol Chem; 2007 Jun; 282(22):16095-104. PubMed ID: 17430903
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dissection of Na+ binding to thrombin.
    Pineda AO; Carrell CJ; Bush LA; Prasad S; Caccia S; Chen ZW; Mathews FS; Di Cera E
    J Biol Chem; 2004 Jul; 279(30):31842-53. PubMed ID: 15152000
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular recognition by thrombin. Role of the slow-->fast transition, site-specific ion binding energetics and thermodynamic mapping of structural components.
    Ayala Y; Di Cera E
    J Mol Biol; 1994 Jan; 235(2):733-46. PubMed ID: 8289292
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The molecular environment of the Na+ binding site of thrombin.
    Zhang E; Tulinsky A
    Biophys Chem; 1997 Jan; 63(2-3):185-200. PubMed ID: 9108691
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Toward understanding allosteric activation of thrombin: a conjecture for important roles of unbound Na(+) molecules around thrombin.
    Kurisaki I; Takayanagi M; Nagaoka M
    J Phys Chem B; 2015 Mar; 119(9):3635-42. PubMed ID: 25654267
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Na
    Xiao J; Salsbury FR
    Phys Chem Chem Phys; 2019 Feb; 21(8):4320-4330. PubMed ID: 30724273
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning.
    Xiao J; Melvin RL; Salsbury FR
    J Biomol Struct Dyn; 2019 Mar; 37(4):982-999. PubMed ID: 29471734
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Na+ binding channel of human coagulation proteases: novel insights on the structure and allosteric modulation revealed by molecular surface analysis.
    Silva FP; Antunes OA; de Alencastro RB; De Simone SG
    Biophys Chem; 2006 Feb; 119(3):282-94. PubMed ID: 16288954
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thrombin allosteric modulation revisited: a molecular dynamics study.
    de Amorim HL; Netz PA; Guimarães JA
    J Mol Model; 2010 Apr; 16(4):725-35. PubMed ID: 19816721
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Crystal structure of thrombin in a self-inhibited conformation.
    Pineda AO; Chen ZW; Bah A; Garvey LC; Mathews FS; Di Cera E
    J Biol Chem; 2006 Oct; 281(43):32922-8. PubMed ID: 16954215
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bound Na(+) is a Negative Effecter for Thrombin-Substrate Stereospecific Complex Formation.
    Kurisaki I; Takayanagi M; Nagaoka M
    J Phys Chem B; 2016 May; 120(20):4540-7. PubMed ID: 27164318
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Effect of Na+ binding on the conformation, stability and molecular recognition properties of thrombin.
    De Filippis V; De Dea E; Lucatello F; Frasson R
    Biochem J; 2005 Sep; 390(Pt 2):485-92. PubMed ID: 15971999
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Probing the hirudin-thrombin interaction by incorporation of noncoded amino acids and molecular dynamics simulation.
    De Filippis V; Colombo G; Russo I; Spadari B; Fontana A
    Biochemistry; 2002 Nov; 41(46):13556-69. PubMed ID: 12427016
    [TBL] [Abstract][Full Text] [Related]  

  • 16.
    Ruben EA; Gandhi PS; Chen Z; Koester SK; DeKoster GT; Frieden C; Di Cera E
    J Biol Chem; 2020 Jun; 295(24):8227-8235. PubMed ID: 32358061
    [TBL] [Abstract][Full Text] [Related]  

  • 17. [Sodium ions as the effector of catalytic action of alpha-thrombin].
    Kolodzeĭskaia MV; Volkov GL
    Ukr Biokhim Zh (1999); 2007; 79(1):5-21. PubMed ID: 18030731
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The active site region plays a critical role in Na
    Pelc LA; Koester SK; Kukla CR; Chen Z; Di Cera E
    J Biol Chem; 2022 Jan; 298(1):101458. PubMed ID: 34861239
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The natural mutation by deletion of Lys9 in the thrombin A-chain affects the pKa value of catalytic residues, the overall enzyme's stability and conformational transitions linked to Na+ binding.
    De Cristofaro R; Carotti A; Akhavan S; Palla R; Peyvandi F; Altomare C; Mannucci PM
    FEBS J; 2006 Jan; 273(1):159-69. PubMed ID: 16367756
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Interplay between conformational selection and zymogen activation.
    Chakraborty P; Acquasaliente L; Pelc LA; Di Cera E
    Sci Rep; 2018 Mar; 8(1):4080. PubMed ID: 29511224
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.