These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

371 related articles for article (PubMed ID: 31992201)

  • 1. QuantTB - a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data.
    Anyansi C; Keo A; Walker BJ; Straub TJ; Manson AL; Earl AM; Abeel T
    BMC Genomics; 2020 Jan; 21(1):80. PubMed ID: 31992201
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance mutations in the Philippines.
    Phelan JE; Lim DR; Mitarai S; de Sessions PF; Tujan MAA; Reyes LT; Medado IAP; Palparan AG; Naim ANM; Jie S; Segubre-Mercado E; Simoes B; Campino S; Hafalla JC; Murase Y; Morishige Y; Hibberd ML; Kato S; Ama MCG; Clark TG
    Sci Rep; 2019 Jun; 9(1):9305. PubMed ID: 31243306
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A retrospective genomic analysis of drug-resistant strains of M. tuberculosis in a high-burden setting, with an emphasis on comparative diagnostics and reactivation and reinfection status.
    Wollenberg K; Harris M; Gabrielian A; Ciobanu N; Chesov D; Long A; Taaffe J; Hurt D; Rosenthal A; Tartakovsky M; Crudu V
    BMC Infect Dis; 2020 Jan; 20(1):17. PubMed ID: 31910804
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Use of whole-genome sequencing to distinguish relapse from reinfection in a completed tuberculosis clinical trial.
    Witney AA; Bateson AL; Jindani A; Phillips PP; Coleman D; Stoker NG; Butcher PD; McHugh TD;
    BMC Med; 2017 Mar; 15(1):71. PubMed ID: 28351427
    [TBL] [Abstract][Full Text] [Related]  

  • 5. TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing.
    Sekizuka T; Yamashita A; Murase Y; Iwamoto T; Mitarai S; Kato S; Kuroda M
    PLoS One; 2015; 10(11):e0142951. PubMed ID: 26565975
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools.
    Schleusener V; Köser CU; Beckert P; Niemann S; Feuerriegel S
    Sci Rep; 2017 Apr; 7():46327. PubMed ID: 28425484
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Recurrent tuberculosis in patients infected with the predominant Mycobacterium tuberculosis outbreak strain in Denmark. New insights gained through whole genome sequencing.
    Folkvardsen DB; Norman A; Rasmussen EM; Lillebaek T; Jelsbak L; Andersen ÅB
    Infect Genet Evol; 2020 Jun; 80():104169. PubMed ID: 31918042
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Overcoming the pitfalls of automatic interpretation of whole genome sequencing data by online tools for the prediction of pyrazinamide resistance in Mycobacterium tuberculosis.
    Iwamoto T; Murase Y; Yoshida S; Aono A; Kuroda M; Sekizuka T; Yamashita A; Kato K; Takii T; Arikawa K; Kato S; Mitarai S
    PLoS One; 2019; 14(2):e0212798. PubMed ID: 30817803
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Diversified lineages and drug-resistance profiles of clinical isolates of
    Noorizhab Fakhruzzaman MN; Abidin NZ; Aziz ZA; Lim WF; Richard JJ; Noorliza MN; Hani MH; Norhayati R; Zamzurina AB; Farida Zuraina MY; Hisyam MJ; Teh LK; Norazmi MN; Zaki MS
    Int J Mycobacteriol; 2019; 8(4):320-328. PubMed ID: 31793500
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints.
    Niemann S; Köser CU; Gagneux S; Plinke C; Homolka S; Bignell H; Carter RJ; Cheetham RK; Cox A; Gormley NA; Kokko-Gonzales P; Murray LJ; Rigatti R; Smith VP; Arends FP; Cox HS; Smith G; Archer JA
    PLoS One; 2009 Oct; 4(10):e7407. PubMed ID: 19823582
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Whole-genome sequencing and single nucleotide polymorphisms in multidrug-resistant clinical isolates of Mycobacterium tuberculosis from the Philippines.
    Roa MB; Tablizo FA; Morado EKD; Cunanan LF; Uy IDC; Ng KCS; Manalastas-Cantos KG; Reyes JM; Ganchua SKC; Ang CF; Kato-Maeda M; Cattamanchi A; Karaoz U; Destura RV; Lluisma AO
    J Glob Antimicrob Resist; 2018 Dec; 15():239-245. PubMed ID: 30130640
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Beyond multidrug resistance: Leveraging rare variants with machine and statistical learning models in Mycobacterium tuberculosis resistance prediction.
    Chen ML; Doddi A; Royer J; Freschi L; Schito M; Ezewudo M; Kohane IS; Beam A; Farhat M
    EBioMedicine; 2019 May; 43():356-369. PubMed ID: 31047860
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex.
    Lipworth S; Jajou R; de Neeling A; Bradley P; van der Hoek W; Maphalala G; Bonnet M; Sanchez-Padilla E; Diel R; Niemann S; Iqbal Z; Smith G; Peto T; Crook D; Walker T; van Soolingen D
    Emerg Infect Dis; 2019 Mar; 25(3):482-488. PubMed ID: 30789126
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data.
    Muzondiwa D; Mutshembele A; Pierneef RE; Reva ON
    Int J Med Microbiol; 2020 Feb; 310(2):151399. PubMed ID: 31980371
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Whole genome sequencing of Mycobacterium tuberculosis for detection of drug resistance: a systematic review.
    Papaventsis D; Casali N; Kontsevaya I; Drobniewski F; Cirillo DM; Nikolayevskyy V
    Clin Microbiol Infect; 2017 Feb; 23(2):61-68. PubMed ID: 27665704
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Early Detection of Emergent Extensively Drug-Resistant Tuberculosis by Flow Cytometry-Based Phenotyping and Whole-Genome Sequencing.
    O'Donnell MR; Larsen MH; Brown TS; Jain P; Munsamy V; Wolf A; Uccellini L; Karim F; de Oliveira T; Mathema B; Jacobs WR; Pym A
    Antimicrob Agents Chemother; 2019 Apr; 63(4):. PubMed ID: 30670422
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Recurrence due to relapse or reinfection with Mycobacterium tuberculosis: a whole-genome sequencing approach in a large, population-based cohort with a high HIV infection prevalence and active follow-up.
    Guerra-Assunção JA; Houben RM; Crampin AC; Mzembe T; Mallard K; Coll F; Khan P; Banda L; Chiwaya A; Pereira RP; McNerney R; Harris D; Parkhill J; Clark TG; Glynn JR
    J Infect Dis; 2015 Apr; 211(7):1154-63. PubMed ID: 25336729
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data.
    Sobkowiak B; Glynn JR; Houben RMGJ; Mallard K; Phelan JE; Guerra-Assunção JA; Banda L; Mzembe T; Viveiros M; McNerney R; Parkhill J; Crampin AC; Clark TG
    BMC Genomics; 2018 Aug; 19(1):613. PubMed ID: 30107785
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Deep Whole-Genome Sequencing to Detect Mixed Infection of Mycobacterium tuberculosis.
    Gan M; Liu Q; Yang C; Gao Q; Luo T
    PLoS One; 2016; 11(7):e0159029. PubMed ID: 27391214
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparative Whole-Genomic Analysis of an Ancient L2 Lineage
    Rajwani R; Yam WC; Zhang Y; Kang Y; Wong BKC; Leung KSS; Tam KKG; Tulu KT; Zhu L; Siu GKH
    Front Cell Infect Microbiol; 2017; 7():539. PubMed ID: 29376038
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 19.