These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 31992738)

  • 1. PreDBA: A heterogeneous ensemble approach for predicting protein-DNA binding affinity.
    Yang W; Deng L
    Sci Rep; 2020 Jan; 10(1):1278. PubMed ID: 31992738
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Computationally identifying hot spots in protein-DNA binding interfaces using an ensemble approach.
    Pan Y; Zhou S; Guan J
    BMC Bioinformatics; 2020 Sep; 21(Suppl 13):384. PubMed ID: 32938375
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An ensemble of reduced alphabets with protein encoding based on grouped weight for predicting DNA-binding proteins.
    Nanni L; Lumini A
    Amino Acids; 2009 Feb; 36(2):167-75. PubMed ID: 18288459
    [TBL] [Abstract][Full Text] [Related]  

  • 4. emPDBA: protein-DNA binding affinity prediction by combining features from binding partners and interface learned with ensemble regression model.
    Yang S; Gong W; Zhou T; Sun X; Chen L; Zhou W; Li C
    Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37193676
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence-based prediction of protein-binding sites in DNA: comparative study of two SVM models.
    Park B; Im J; Tuvshinjargal N; Lee W; Han K
    Comput Methods Programs Biomed; 2014 Nov; 117(2):158-67. PubMed ID: 25113160
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PredPRBA: Prediction of Protein-RNA Binding Affinity Using Gradient Boosted Regression Trees.
    Deng L; Yang W; Liu H
    Front Genet; 2019; 10():637. PubMed ID: 31428122
    [TBL] [Abstract][Full Text] [Related]  

  • 7. StackDPPred: a stacking based prediction of DNA-binding protein from sequence.
    Mishra A; Pokhrel P; Hoque MT
    Bioinformatics; 2019 Feb; 35(3):433-441. PubMed ID: 30032213
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein-protein binding affinity prediction from amino acid sequence.
    Yugandhar K; Gromiha MM
    Bioinformatics; 2014 Dec; 30(24):3583-9. PubMed ID: 25172924
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PDNAsite: Identification of DNA-binding Site from Protein Sequence by Incorporating Spatial and Sequence Context.
    Zhou J; Xu R; He Y; Lu Q; Wang H; Kong B
    Sci Rep; 2016 Jun; 6():27653. PubMed ID: 27282833
    [TBL] [Abstract][Full Text] [Related]  

  • 10. iDNAProt-ES: Identification of DNA-binding Proteins Using Evolutionary and Structural Features.
    Chowdhury SY; Shatabda S; Dehzangi A
    Sci Rep; 2017 Nov; 7(1):14938. PubMed ID: 29097781
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MsDBP: Exploring DNA-Binding Proteins by Integrating Multiscale Sequence Information via Chou's Five-Step Rule.
    Du X; Diao Y; Liu H; Li S
    J Proteome Res; 2019 Aug; 18(8):3119-3132. PubMed ID: 31267738
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes.
    Srinivasulu YS; Wang JR; Hsu KT; Tsai MJ; Charoenkwan P; Huang WL; Huang HL; Ho SY
    BMC Bioinformatics; 2015; 16 Suppl 18(Suppl 18):S14. PubMed ID: 26681483
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Predicting protein-DNA binding free energy change upon missense mutations using modified MM/PBSA approach: SAMPDI webserver.
    Peng Y; Sun L; Jia Z; Li L; Alexov E
    Bioinformatics; 2018 Mar; 34(5):779-786. PubMed ID: 29091991
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting a DNA-binding protein using random forest with multiple mathematical features.
    Guan C; Niu X; Shi F; Yang K; Li N
    Biomed Mater Eng; 2015; 26 Suppl 1():S1883-9. PubMed ID: 26405960
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational learning on specificity-determining residue-nucleotide interactions.
    Wong KC; Li Y; Peng C; Moses AM; Zhang Z
    Nucleic Acids Res; 2015 Dec; 43(21):10180-9. PubMed ID: 26527718
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Building an automated classification of DNA-binding protein domains.
    Ponomarenko JV; Bourne PE; Shindyalov IN
    Bioinformatics; 2002; 18 Suppl 2():S192-201. PubMed ID: 12386003
    [TBL] [Abstract][Full Text] [Related]  

  • 17. mCSM-NA: predicting the effects of mutations on protein-nucleic acids interactions.
    Pires DEV; Ascher DB
    Nucleic Acids Res; 2017 Jul; 45(W1):W241-W246. PubMed ID: 28383703
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information.
    Li T; Li QZ; Liu S; Fan GL; Zuo YC; Peng Y
    Bioinformatics; 2013 Mar; 29(6):678-85. PubMed ID: 23335013
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PANDA: Predicting the change in proteins binding affinity upon mutations by finding a signal in primary structures.
    Abbasi WA; Abbas SA; Andleeb S
    J Bioinform Comput Biol; 2021 Aug; 19(4):2150015. PubMed ID: 34126874
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information.
    Ma X; Guo J; Liu HD; Xie JM; Sun X
    IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(6):1766-75. PubMed ID: 22868682
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.