152 related articles for article (PubMed ID: 32009147)
21. Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments.
Lun AT; Perry M; Ing-Simmons E
F1000Res; 2016; 5():950. PubMed ID: 27303634
[TBL] [Abstract][Full Text] [Related]
22. CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures.
Hentrich T; Schulze JM; Emberly E; Kobor MS
Bioinformatics; 2012 Mar; 28(5):717-8. PubMed ID: 22238257
[TBL] [Abstract][Full Text] [Related]
23. An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data.
Carty M; Zamparo L; Sahin M; González A; Pelossof R; Elemento O; Leslie CS
Nat Commun; 2017 May; 8():15454. PubMed ID: 28513628
[TBL] [Abstract][Full Text] [Related]
24. MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops.
Tang L; Liao J; Hill MC; Hu J; Zhao Y; Ellinor PT; Li M
Nucleic Acids Res; 2024 Mar; 52(5):e25. PubMed ID: 38281134
[TBL] [Abstract][Full Text] [Related]
25. C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.
Mehdi T; Bailey SD; Guilhamon P; Lupien M
Bioinformatics; 2019 Mar; 35(5):877-879. PubMed ID: 30816925
[TBL] [Abstract][Full Text] [Related]
26. MATCHA: Probing multi-way chromatin interaction with hypergraph representation learning.
Zhang R; Ma J
Cell Syst; 2020 May; 10(5):397-407.e5. PubMed ID: 32550271
[TBL] [Abstract][Full Text] [Related]
27. Accurate loop calling for 3D genomic data with cLoops.
Cao Y; Chen Z; Chen X; Ai D; Chen G; McDermott J; Huang Y; Guo X; Han JJ
Bioinformatics; 2020 Feb; 36(3):666-675. PubMed ID: 31504161
[TBL] [Abstract][Full Text] [Related]
28. 4DGenome: a comprehensive database of chromatin interactions.
Teng L; He B; Wang J; Tan K
Bioinformatics; 2015 Aug; 31(15):2560-4. PubMed ID: 25788621
[TBL] [Abstract][Full Text] [Related]
29. HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.
Rosen JD; Yang Y; Abnousi A; Chen J; Song M; Jones IR; Shen Y; Hu M; Li Y
Curr Issues Mol Biol; 2021 Sep; 43(2):1156-1170. PubMed ID: 34563051
[TBL] [Abstract][Full Text] [Related]
30. multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.
Stansfield JC; Cresswell KG; Dozmorov MG
Bioinformatics; 2019 Sep; 35(17):2916-2923. PubMed ID: 30668639
[TBL] [Abstract][Full Text] [Related]
31. ChromLoops: a comprehensive database for specific protein-mediated chromatin loops in diverse organisms.
Zhou Q; Cheng S; Zheng S; Wang Z; Guan P; Zhu Z; Huang X; Zhou C; Li G
Nucleic Acids Res; 2023 Jan; 51(D1):D57-D69. PubMed ID: 36243984
[TBL] [Abstract][Full Text] [Related]
32. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
[TBL] [Abstract][Full Text] [Related]
33. Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells.
Ando-Kuri M; Rivera ISM; Rowley MJ; Corces VG
Methods Mol Biol; 2018; 1766():239-256. PubMed ID: 29605857
[TBL] [Abstract][Full Text] [Related]
34. capC-MAP: software for analysis of Capture-C data.
Buckle A; Gilbert N; Marenduzzo D; Brackley CA
Bioinformatics; 2019 Nov; 35(22):4773-4775. PubMed ID: 31173058
[TBL] [Abstract][Full Text] [Related]
35. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
36. Deciphering Hi-C: from 3D genome to function.
Kong S; Zhang Y
Cell Biol Toxicol; 2019 Feb; 35(1):15-32. PubMed ID: 30610495
[TBL] [Abstract][Full Text] [Related]
37. ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.
Li G; Chen Y; Snyder MP; Zhang MQ
Nucleic Acids Res; 2017 Jan; 45(1):e4. PubMed ID: 27625391
[TBL] [Abstract][Full Text] [Related]
38. A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.
Kremsky I; Bellora N; Eyras E
PLoS One; 2015; 10(7):e0132448. PubMed ID: 26207626
[TBL] [Abstract][Full Text] [Related]
39. GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.
Ursu O; Boley N; Taranova M; Wang YXR; Yardimci GG; Stafford Noble W; Kundaje A
Bioinformatics; 2018 Aug; 34(16):2701-2707. PubMed ID: 29554289
[TBL] [Abstract][Full Text] [Related]
40. Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3).
Li G; Sun T; Chang H; Cai L; Hong P; Zhou Q
Genes (Basel); 2019 Jul; 10(7):. PubMed ID: 31336684
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
