BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 32009779)

  • 21. Characterization of structural variants with single molecule and hybrid sequencing approaches.
    Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
    Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
    [TBL] [Abstract][Full Text] [Related]  

  • 22. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
    Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A crowdsourced set of curated structural variants for the human genome.
    Chapman LM; Spies N; Pai P; Lim CS; Carroll A; Narzisi G; Watson CM; Proukakis C; Clarke WE; Nariai N; Dawson E; Jones G; Blankenberg D; Brueffer C; Xiao C; Kolora SRR; Alexander N; Wolujewicz P; Ahmed AE; Smith G; Shehreen S; Wenger AM; Salit M; Zook JM
    PLoS Comput Biol; 2020 Jun; 16(6):e1007933. PubMed ID: 32559231
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Parliament2: Accurate structural variant calling at scale.
    Zarate S; Carroll A; Mahmoud M; Krasheninina O; Jun G; Salerno WJ; Schatz MC; Boerwinkle E; Gibbs RA; Sedlazeck FJ
    Gigascience; 2020 Dec; 9(12):. PubMed ID: 33347570
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Pysim-sv: a package for simulating structural variation data with GC-biases.
    Xia Y; Liu Y; Deng M; Xi R
    BMC Bioinformatics; 2017 Mar; 18(Suppl 3):53. PubMed ID: 28361688
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Detecting inherited and novel structural variants in low-coverage parent-child sequencing data.
    Spence M; Banuelos M; Marcia RF; Sindi S
    Methods; 2020 Feb; 173():61-68. PubMed ID: 31271880
    [TBL] [Abstract][Full Text] [Related]  

  • 27. FusorSV: an algorithm for optimally combining data from multiple structural variation detection methods.
    Becker T; Lee WP; Leone J; Zhu Q; Zhang C; Liu S; Sargent J; Shanker K; Mil-Homens A; Cerveira E; Ryan M; Cha J; Navarro FCP; Galeev T; Gerstein M; Mills RE; Shin DG; Lee C; Malhotra A
    Genome Biol; 2018 Mar; 19(1):38. PubMed ID: 29559002
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Validation of Genomic Structural Variants Through Long Sequencing Technologies.
    Zhao X
    Methods Mol Biol; 2018; 1833():187-192. PubMed ID: 30039374
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Noise cancellation using total variation for copy number variation detection.
    Zare F; Hosny A; Nabavi S
    BMC Bioinformatics; 2018 Oct; 19(Suppl 11):361. PubMed ID: 30343665
    [TBL] [Abstract][Full Text] [Related]  

  • 30. SVcnn: an accurate deep learning-based method for detecting structural variation based on long-read data.
    Zheng Y; Shang X
    BMC Bioinformatics; 2023 May; 24(1):213. PubMed ID: 37221476
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Cue: a deep-learning framework for structural variant discovery and genotyping.
    Popic V; Rohlicek C; Cunial F; Hajirasouliha I; Meleshko D; Garimella K; Maheshwari A
    Nat Methods; 2023 Apr; 20(4):559-568. PubMed ID: 36959322
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Assessing structural variation in a personal genome-towards a human reference diploid genome.
    English AC; Salerno WJ; Hampton OA; Gonzaga-Jauregui C; Ambreth S; Ritter DI; Beck CR; Davis CF; Dahdouli M; Ma S; Carroll A; Veeraraghavan N; Bruestle J; Drees B; Hastie A; Lam ET; White S; Mishra P; Wang M; Han Y; Zhang F; Stankiewicz P; Wheeler DA; Reid JG; Muzny DM; Rogers J; Sabo A; Worley KC; Lupski JR; Boerwinkle E; Gibbs RA
    BMC Genomics; 2015 Apr; 16(1):286. PubMed ID: 25886820
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Toolkit for automated and rapid discovery of structural variants.
    Soylev A; Kockan C; Hormozdiari F; Alkan C
    Methods; 2017 Oct; 129():3-7. PubMed ID: 28583483
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Evaluating Structural Variation Detection Tools for Long-Read Sequencing Datasets in
    Luan MW; Zhang XM; Zhu ZB; Chen Y; Xie SQ
    Front Genet; 2020; 11():159. PubMed ID: 32211024
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Tools for annotation and comparison of structural variation.
    Sedlazeck FJ; Dhroso A; Bodian DL; Paschall J; Hermes F; Zook JM
    F1000Res; 2017; 6():1795. PubMed ID: 29123647
    [TBL] [Abstract][Full Text] [Related]  

  • 36. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
    Iakovishina D; Janoueix-Lerosey I; Barillot E; Regnier M; Boeva V
    Bioinformatics; 2016 Apr; 32(7):984-92. PubMed ID: 26740523
    [TBL] [Abstract][Full Text] [Related]  

  • 37. NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.
    Fang L; Hu J; Wang D; Wang K
    BMC Bioinformatics; 2018 May; 19(1):180. PubMed ID: 29792160
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A sequence-aware merger of genomic structural variations at population scale.
    Zheng Z; Zhu M; Zhang J; Liu X; Hou L; Liu W; Yuan S; Luo C; Yao X; Liu J; Yang Y
    Nat Commun; 2024 Feb; 15(1):960. PubMed ID: 38307885
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses.
    Loiseau V; Herniou EA; Moreau Y; Lévêque N; Meignin C; Daeffler L; Federici B; Cordaux R; Gilbert C
    Virus Evol; 2020 Jan; 6(1):vez060. PubMed ID: 32002191
    [TBL] [Abstract][Full Text] [Related]  

  • 40. stLFRsv: A Germline Structural Variant Analysis Pipeline Using Co-barcoded Reads.
    Guo J; Shi C; Chen X; Wang O; Liu P; Yang H; Xu X; Zhang W; Zhu H
    Front Genet; 2021; 12():636239. PubMed ID: 33815469
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.