BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

645 related articles for article (PubMed ID: 32014034)

  • 1. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
    Yan F; Powell DR; Curtis DJ; Wong NC
    Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analytical Approaches for ATAC-seq Data Analysis.
    Smith JP; Sheffield NC
    Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
    Tatara M; Ikeda T; Namekawa SH; Maezawa S
    Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq.
    Massarat AR; Sen A; Jaureguy J; Tyndale ST; Fu Y; Erikson G; McVicker G
    Nucleic Acids Res; 2021 Aug; 49(14):7986-7994. PubMed ID: 34313779
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Profiling single-cell chromatin accessibility in plants.
    Marand AP; Zhang X; Nelson J; Braga Dos Reis PA; Schmitz RJ
    STAR Protoc; 2021 Sep; 2(3):100737. PubMed ID: 34430912
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

  • 7. [ATAC-seq and its applications in complex disease].
    Chen M; Zhang Z; Meng ZY; Zhang XJ
    Yi Chuan; 2020 Apr; 42(4):347-353. PubMed ID: 32312703
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data.
    Xu B; Li X; Gao X; Jia Y; Liu J; Li F; Zhang Z
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34875002
    [TBL] [Abstract][Full Text] [Related]  

  • 9. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
    Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
    Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
    Reske JJ; Wilson MR; Chandler RL
    Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Systematic benchmarking of single-cell ATAC-sequencing protocols.
    De Rop FV; Hulselmans G; Flerin C; Soler-Vila P; Rafels A; Christiaens V; González-Blas CB; Marchese D; Caratù G; Poovathingal S; Rozenblatt-Rosen O; Slyper M; Luo W; Muus C; Duarte F; Shrestha R; Bagdatli ST; Corces MR; Mamanova L; Knights A; Meyer KB; Mulqueen R; Taherinasab A; Maschmeyer P; Pezoldt J; Lambert CLG; Iglesias M; Najle SR; Dossani ZY; Martelotto LG; Burkett Z; Lebofsky R; Martin-Subero JI; Pillai S; Sebé-Pedrós A; Deplancke B; Teichmann SA; Ludwig LS; Braun TP; Adey AC; Greenleaf WJ; Buenrostro JD; Regev A; Aerts S; Heyn H
    Nat Biotechnol; 2024 Jun; 42(6):916-926. PubMed ID: 37537502
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
    Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
    Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Chromatin accessibility profiling by ATAC-seq.
    Grandi FC; Modi H; Kampman L; Corces MR
    Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
    Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
    Marinov GK; Shipony Z
    Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Assay for Transposase-Accessible Chromatin-Sequencing Using
    Bright AR; Veenstra GJC
    Cold Spring Harb Protoc; 2019 Jan; 2019(1):. PubMed ID: 30042136
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing Chromatin Accessibility During WBR in Acoels.
    Gehrke AR; Srivastava M
    Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Deciphering cell types by integrating scATAC-seq data with genome sequences.
    Zeng Y; Luo M; Shangguan N; Shi P; Feng J; Xu J; Chen K; Lu Y; Yu W; Yang Y
    Nat Comput Sci; 2024 Apr; 4(4):285-298. PubMed ID: 38600256
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
    Miskimen KLS; Chan ER; Haines JL
    Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparison of differential accessibility analysis strategies for ATAC-seq data.
    Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
    Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.